LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele25g1654	ATGCATTATCCTTCTTCGTCCTTCGATCATAAATCTTTTGAAATTTCTGATCAGGTTGTAGACTCACCCACTCTTAATGGTTATAAGCCACAACCAGTGACGGCTATTGAAGATGTTCAAAATGGATATTCTTTTTCTACAGATAAGTGTGTAGCAATTAAAACGGAAAGCACTTCAGGTCAGAACTTGAAGTTTCCTTCAGCTGATTCTAGAAATTCCCATACACAAAGACAACAACCTGATGATGGATATAAGTGGAAAAAATATGGGCAAACAGAAGTGAAGGGAACTAAAAATTCAAGAAGTTATTACAAATGCACATATCACAATTGCGAATCAAAGAAGAAAGTAGAGAGATCTTTAGTAAATGGAGAGATTACTCGGAGTTTTTATCGAGGTAAACATAATCATGCCACGCCTCCATCTAATAGGAGATCAAATGCAAGTTCTTCATCATATTCTGCAATTTCTGCTTTAAATCCTGTGAAAGCGGAAATGTCAGAGCATCACTCAATTTTCAATTATGTTGGAACACATGAGATCAACTCATCAGCTGCATTAATGGTAGATGATGATTTTGAACAGACGAAATCAGGAGGAGGGCGATATTATTTTGTTCATGATGGACATAACAAATGGAAAATGGGAGTTAAAGAGAATAAAGATGAGACACACAAAATTGAGTTCCACATGCCCAGTAAGATAGATCTTTCTCCAATTCTAGCACCAAGTGCAGTGGGTGGTGGCTTAGTTCGGCTTGTTGTGAGTGTTAATGCTAGGTTTGTTTTTAGTTTAGTTTGTTCCGACACTTGGGATGAGGTTTATGTTTCAGAGCTCTCATTCATTGCTCACGTCACGTGA	861	0.374	MHYPSSSFDHKSFEISDQVVDSPTLNGYKPQPVTAIEDVQNGYSFSTDKCVAIKTESTSGQNLKFPSADSRNSHTQRQQPDDGYKWKKYGQTEVKGTKNSRSYYKCTYHNCESKKKVERSLVNGEITRSFYRGKHNHATPPSNRRSNASSSSYSAISALNPVKAEMSEHHSIFNYVGTHEINSSAALMVDDDFEQTKSGGGRYYFVHDGHNKWKMGVKENKDETHKIEFHMPSKIDLSPILAPSAVGGGLVRLVVSVNARFVFSLVCSDTWDEVYVSELSFIAHVT	286

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele25g1654	286	SUPERFAMILY	WRKY DNA-binding domain	76	140	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Lele25g1654	286	ProSiteProfiles	WRKY domain profile.	75	140	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lele25g1654	286	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	60	179	IPR044810	GO:0003700
	Lele25g1654	286	MobiDBLite	consensus disorder prediction	60	74	-	-
	Lele25g1654	286	Pfam	WRKY DNA -binding domain	81	137	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lele25g1654	286	MobiDBLite	consensus disorder prediction	131	152	-	-
	Lele25g1654	286	MobiDBLite	consensus disorder prediction	60	88	-	-
	Lele25g1654	286	SMART	WRKY_cls	80	139	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lele25g1654	286	Gene3D	WRKY domain	67	141	IPR036576	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele25g1654	Lele-ChrLele25	23794726	23797005	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele25g1654	81	150	WRKY Transcription Factor Family	AT5G07100	57.143	3.29e-23	93.2

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Lele25g1654		WRKY	9e-20	CL0274