Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1639 ATGGCGTCATCGTCGAGCAGTGGATTGACATTCAAGCTACATCCTTTGGTGATAGTCAACATATCGGATCATTATACTCGGGTTAAGTCACAGATGAACCCACCCATTGCATCCCATCAGAGAAGTACCACCTCCGCTAACACTAATGCTGCTGAAGAAATGGTTTCCCTTTCTCATAGGGTATACGGATGCGTTATAGGAGTACAGAGAGGACGTACCGTAGAGATTTTCAATAGCTTCGAACTTCTTTACGACCCTTCTACCCATTCCCTCGATCGTACTTTTCTTGAGAAGAAGCAAGAGCTCTACAAGAAGGTTTTCCCCCACTTCTACATACTAGGATGGTATTCAACTGGGAGCGACGCCCAGGAGTCAGATATGCATATTCACAAAGCTTTGATGGATATCAATGAAAGTCCAGTGTATGTACTTCTGAATCCTTCAATCAATCTTGCTCAGAAGGATCTCCCTGTCAGTATTTTTGAAAGTGAACTGCATGTAATAGACGGGATTCCACAACTGATCTTTGTTCGTTCCAGCTACACTATTGAGACTGTTGAAGCAGAACGGATTTCAGTTGATCATGTTGCACATCTTAAGCCATCAGATGGTGGTTCAGCCGCTACGCAATTAGCTGCTCACCTTACTGGTATACACAGTGCTATTAAAATGCTGCATAGCAGAATTAAGGTGCTGCATCATTATCTTCTTGCAATGCAGAAAGGTACATCTGTCTCCTTACTGTAA 747 0.4311 MASSSSSGLTFKLHPLVIVNISDHYTRVKSQMNPPIASHQRSTTSANTNAAEEMVSLSHRVYGCVIGVQRGRTVEIFNSFELLYDPSTHSLDRTFLEKKQELYKKVFPHFYILGWYSTGSDAQESDMHIHKALMDINESPVYVLLNPSINLAQKDLPVSIFESELHVIDGIPQLIFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLHSRIKVLHHYLLAMQKGTSVSLL 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1639 248 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 7 139 IPR000555 GO:0005515|GO:0008233|GO:0008237
Lele25g1639 248 SMART pad1_6 10 166 IPR000555 GO:0005515|GO:0008233|GO:0008237
Lele25g1639 248 CDD MPN_CSN6 9 242 IPR033859 GO:0000338|GO:0008180
Lele25g1639 248 FunFam COP9 signalosome subunit 6 1 201 - -
Lele25g1639 248 ProSiteProfiles MPN domain profile. 36 167 IPR037518 -
Lele25g1639 248 Gene3D Cytidine Deaminase, domain 2 1 201 - -
Lele25g1639 248 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 3 243 - -
Lele25g1639 248 Pfam Maintenance of mitochondrial structure and function 187 243 IPR024969 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1639 Lele-ChrLele25 21973146 21976646 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g1639 2 242 Eukaryotic Initiation Factors Gene Family AT2G39990 22.764 3.31e-06 45.4