Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1634 ATGTCCGTACAAATTTCCACTGTAAACCGGCCTGCGTCTGATCAAAGTACCTCTTTTGAGGTTGAGGATGATCCATTATTATGCAAAAGTCGAAGAAGAAGAACCCATCAAAAGATCTTCAGAATCATACTCACAGACCTTGATGCTACAGATTCCGACACTTGCAGTGATGAAGATGAAGAGATACCTCGCACACTTCGAAGAGTTAAGAAGCATATCACAGAGATTACTATGGATCTTCCCTCTACTCGTCAGCCAACTTCCTCTTCTTCACTTGCTTGTTTCGCGAAACACGACCGCCATACTTTCTTGAAGAGACCTAAAAAATCTCCAGCTCGTTGCCACAACAAGTACAGGGGTGTTCGCCGGAGGCCGTGGGGGCGGTGGGCCGCCGAGATCCGAGACCCGACGCGTCAGAAACGATTGTGGCTGGGAACCTTTGACACCGCGGAGGAAGCCGCCAGCGAGTACGACAAGGCTGCGATCATGCTCAAGGGTGCTAACGCCGTCACGAACTTCCCAAATTCTTTCCCTAATTCTGTTGTGACGGAGAAAGAAACAAGGTTGGTAACCGTGGACACCCCACCGAGCACCACCGAGGGATTCGCCTCATCCATGGAGTCTCCGACGTCTGTGCTGGCCTACGACAGTGATTATTCTACGGCGGCCTTCGAGGGTTTCTACAACCGGGATGCGTTGGGATTCGATATCGAGATGCCGTTGACGGACATTAATGTGGGGGGCTTCGGTCAGACGAAGTCGTCGGAGACTGAAGAATTCGAAGACTTTGACGTGGACGAGTTCTTGACGTGGCCTAGCTAA 822 0.5097 MSVQISTVNRPASDQSTSFEVEDDPLLCKSRRRRTHQKIFRIILTDLDATDSDTCSDEDEEIPRTLRRVKKHITEITMDLPSTRQPTSSSSLACFAKHDRHTFLKRPKKSPARCHNKYRGVRRRPWGRWAAEIRDPTRQKRLWLGTFDTAEEAASEYDKAAIMLKGANAVTNFPNSFPNSVVTEKETRLVTVDTPPSTTEGFASSMESPTSVLAYDSDYSTAAFEGFYNRDALGFDIEMPLTDINVGGFGQTKSSETEEFEDFDVDEFLTWPS 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1634 273 Gene3D AP2/ERF domain 116 175 IPR036955 GO:0003700|GO:0006355
Lele25g1634 273 PRINTS Ethylene responsive element binding protein signature 118 129 IPR001471 GO:0003700|GO:0006355
Lele25g1634 273 PRINTS Ethylene responsive element binding protein signature 140 156 IPR001471 GO:0003700|GO:0006355
Lele25g1634 273 ProSiteProfiles AP2/ERF domain profile. 117 174 IPR001471 GO:0003700|GO:0006355
Lele25g1634 273 CDD AP2 117 176 IPR001471 GO:0003700|GO:0006355
Lele25g1634 273 FunFam Ethylene-responsive transcription factor 2 116 175 - -
Lele25g1634 273 MobiDBLite consensus disorder prediction 1 21 - -
Lele25g1634 273 PIRSF PTI6 12 273 IPR017392 GO:0003700
Lele25g1634 273 SUPERFAMILY DNA-binding domain 117 176 IPR016177 GO:0003677
Lele25g1634 273 Pfam AP2 domain 117 166 IPR001471 GO:0003700|GO:0006355
Lele25g1634 273 MobiDBLite consensus disorder prediction 1 20 - -
Lele25g1634 273 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 37 217 - -
Lele25g1634 273 SMART rav1_2 117 180 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1634 Lele-ChrLele25 21797991 21798812 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g1634 34 215 AP2-EREBP Transcription Factor Family AT4G27950 42.408 1.78e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele25g1634 AP2 7.2e-15 CL0081