Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1553 ATGAGGAAAGGCAGAGCAGCCGCGCCGGTGAAGACGGCTGCTGCGGCGGTAGCAGCAGCTGGGGTTGACGGAGGATCCGGATCGAGGACGGTTTTAAAAGAGCCGAGGTACCGGGGCGTGAGGAAGAGGCCGTGGGGTAGATTTGCTGCGGAGATCAGAGACCCTGTGAAGAAAGCTCGTGTGTGGCTTGGCACCTTCGATTCCGCCGAAGAAGCCGCTAAAGCTTACGACGCCGCCGCTCTCAGCCTCCGTGGACCTAAGGCTAAGACCAACTTTCCGATCATCCCTTCTTCTCTCTCACCTTTCTGTTACCACCACAACAATAACAACCCCACCGATCCGTTTTTAGATCACAGGTTGTATGCTTCTAATGGCTTCCAGGAGCACCAGATCAATCCTCAGAGACCTACTTCTAGCGGCATGAGCAGCACCGTAGAGTCCTTTAGCGGCCCTCGCCCTCGCTCGATTGCGCCGCCGTTGACCACCACCACAACCTCCCGGAGATACCCTCGGACGCCGCCAGTCGTGCCAGAGGATTGCCACAGCGACTGCGATTCATCGTCGTCTGTGGTTGACAACGACGGCGATGATATCGCGTCATCCTCTTTCCGGCGGCCTTTCCCCTTCGATCTTAACTTCCCACCGGTCGATGACGATCTTCACTTCACCGATCTGCGTCTCTGA 684 0.5731 MRKGRAAAPVKTAAAAVAAAGVDGGSGSRTVLKEPRYRGVRKRPWGRFAAEIRDPVKKARVWLGTFDSAEEAAKAYDAAALSLRGPKAKTNFPIIPSSLSPFCYHHNNNNPTDPFLDHRLYASNGFQEHQINPQRPTSSGMSSTVESFSGPRPRSIAPPLTTTTTSRRYPRTPPVVPEDCHSDCDSSSSVVDNDGDDIASSSFRRPFPFDLNFPPVDDDLHFTDLRL 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1553 227 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 26 195 - -
Lele25g1553 227 SMART rav1_2 36 99 IPR001471 GO:0003700|GO:0006355
Lele25g1553 227 MobiDBLite consensus disorder prediction 129 170 - -
Lele25g1553 227 CDD AP2 35 94 IPR001471 GO:0003700|GO:0006355
Lele25g1553 227 SUPERFAMILY DNA-binding domain 36 94 IPR016177 GO:0003677
Lele25g1553 227 MobiDBLite consensus disorder prediction 129 197 - -
Lele25g1553 227 FunFam Ethylene-responsive transcription factor 2 36 94 - -
Lele25g1553 227 ProSiteProfiles AP2/ERF domain profile. 36 93 IPR001471 GO:0003700|GO:0006355
Lele25g1553 227 Gene3D AP2/ERF domain 36 95 IPR036955 GO:0003700|GO:0006355
Lele25g1553 227 MobiDBLite consensus disorder prediction 182 196 - -
Lele25g1553 227 Pfam AP2 domain 35 85 IPR001471 GO:0003700|GO:0006355
Lele25g1553 227 PRINTS Ethylene responsive element binding protein signature 37 48 IPR001471 GO:0003700|GO:0006355
Lele25g1553 227 PRINTS Ethylene responsive element binding protein signature 59 75 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1553 Lele-ChrLele25 12522085 12522768 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g1553 1 227 AP2-EREBP Transcription Factor Family AT3G20310 58.039 3.55e-63 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele25g1553 AP2 6.9e-16 CL0081