Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1494 ATGGAGTCTGCTAACCACTCCGCTTCGCAGCTCCAGCCTTCGGATTCCGACGATGTCGCATTTAACGATCTGAATCAGCTCGGCTCGAGGCAGAATTCCGACGCCGGAGCATCTGCCTCTGGCAGTGGAGGTGCCCGGTACAAGCTGATGTCGCCGGCTAAGCTTCCGATCTCGAGGTCGCCCTGTATTACGATACCTCCTGGGCTGAGTCCGACGTCGTTTCTCGAATCCCCGGTGCTTCTGTCCAACATGAAGGTGGAGCCCTCGCCAACGACAGGGTCTCTTACTAAGCCTCAAGCAGTGTTCAGTTCTGTTGCTTCTGCAGCATTTCCTCTAACTACCATATGCTCAAATACAAATACTGTTGATGACAGAACATCTGGCTTCTTTGAGTTTAAACCACACTGTAGCACAGATATGGTTCCTGCTGATTTTAACAACCATGTAATAAATGAACAGTCCAGGCACATAGATGGTCCAGGCCATCTTCAATCATATGCCTCTTCAACATTAGTTAAAACTGAGACAGCGGCACCATCAAATAAATTGAGTCTATCTTCAGCTGTTCAAATGGTTAGTTCAGGTACTACTGCTCCTGTTGAAGTTGATCCGGATAAACTTAACCAGAAAGGCAATGCCAGCCCTGGGCTTCAAGCATCTTTAGTTGATGGTAGAGGCAATAGCCTTCCAGTTGCATCTGATAGAATATCAGATGATGGGTACAATTGGAGAAAATACGGCCAGAAACATGTTAAGGGATGTGAATTTCCACGCAGCTACTACAAATGCACGCACCCAAATTGTGAAGTAAAAAAGTTATTTGAACGTTCTCATGATGGGCAAATAACAGAGATAATTTATAAGGGAAAGCATGATCATCCTAAACCTCAACCAAGCCGCCGATACTCTGCTGGTACTATGATGTCTATACAAGAAGAGAGAACTGACAAGGCTTCATCAGCCAGCCAAGATGACAAATCATCCAATATGCTTGCTCTGGTGCCTCACATAGCTGAACCCAACAGTAACCCAGATCAATCTCCCATACCTGCTGATAGTCCAGAGGGTATTGGGTTAGTGTCAAATAGGGCTAATGATGAGGTTGATGATGATGATGATCCCTTCTCAAAGAGAAGCAAAATGGACTATGGAAATTCTGACATCACTCCTATAGTTAAGCCAATCCGGGAACCACGGGTTGTTGTACAAACACTAAGTGAAGTTGACATATTGGATGATGGTTACCGCTGGCGTAAGTATGGGCAGAAGGTGGTTAGAGGCAATCCTAACCCTAGGAGTTATTACAAATGCACAAATGTCGGTTGCCCTGTTAGGAAACACGTGGAGAGGGCGTCTCATGATCCCAAAGCAGTAATAACCACCTACGAGGGTAAACACAATCATGACGTGCCTACTGCAAGGAGCACGAGCCATGACACGGCGGGACCAACAGTTGTTGCTGGTGGGCAGACAAAAACTAGACCAGATGAAAGTGATAATATTAGCCTTGACCTTGGGATGTGCATTAGATCGGCTGCTGAAAATATACCAAACAGACAAGGGCAATTGCTGCTCTCTGAATTCGGGAATGGTCAAACTCACCCCGGCAATTCCAGTCTCAAATTTGTTCATAATACCCCTGCTCCAGCATACTTCAGTGTCCTTAATAATGGCTCAAATCCATATGGTTCTAGAGAAAATTTGAGTGATGGGCCAGCTTTGAACCATTCCTCTTATCCATGCCCTCCGAACATGGGAAGAATACTAACCGGTCCGTGA 1779 0.4587 MESANHSASQLQPSDSDDVAFNDLNQLGSRQNSDAGASASGSGGARYKLMSPAKLPISRSPCITIPPGLSPTSFLESPVLLSNMKVEPSPTTGSLTKPQAVFSSVASAAFPLTTICSNTNTVDDRTSGFFEFKPHCSTDMVPADFNNHVINEQSRHIDGPGHLQSYASSTLVKTETAAPSNKLSLSSAVQMVSSGTTAPVEVDPDKLNQKGNASPGLQASLVDGRGNSLPVASDRISDDGYNWRKYGQKHVKGCEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGKHDHPKPQPSRRYSAGTMMSIQEERTDKASSASQDDKSSNMLALVPHIAEPNSNPDQSPIPADSPEGIGLVSNRANDEVDDDDDPFSKRSKMDYGNSDITPIVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNVGCPVRKHVERASHDPKAVITTYEGKHNHDVPTARSTSHDTAGPTVVAGGQTKTRPDESDNISLDLGMCIRSAAENIPNRQGQLLLSEFGNGQTHPGNSSLKFVHNTPAPAYFSVLNNGSNPYGSRENLSDGPALNHSSYPCPPNMGRILTGP 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1494 592 FunFam WRKY transcription factor 227 297 - -
Lele25g1494 592 Pfam WRKY DNA -binding domain 238 294 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele25g1494 592 Pfam WRKY DNA -binding domain 412 468 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele25g1494 592 MobiDBLite consensus disorder prediction 337 382 - -
Lele25g1494 592 SMART WRKY_cls 411 470 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele25g1494 592 SMART WRKY_cls 237 295 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele25g1494 592 SUPERFAMILY WRKY DNA-binding domain 403 471 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lele25g1494 592 SUPERFAMILY WRKY DNA-binding domain 235 296 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lele25g1494 592 MobiDBLite consensus disorder prediction 467 499 - -
Lele25g1494 592 ProSiteProfiles WRKY domain profile. 406 471 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele25g1494 592 Gene3D WRKY domain 398 464 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lele25g1494 592 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 77 496 IPR044810 GO:0003700
Lele25g1494 592 MobiDBLite consensus disorder prediction 474 496 - -
Lele25g1494 592 MobiDBLite consensus disorder prediction 1 44 - -
Lele25g1494 592 MobiDBLite consensus disorder prediction 1 39 - -
Lele25g1494 592 Gene3D WRKY domain 230 297 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lele25g1494 592 ProSiteProfiles WRKY domain profile. 232 296 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele25g1494 592 FunFam WRKY transcription factor 33 398 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1494 Lele-ChrLele25 11481283 11486975 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g1494 50 592 WRKY Transcription Factor Family AT4G26640 55.091 0.0 526
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lele25g1494 WRKY 3.4e-25 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1494 25 11481283 11486975 Lele27g0582 27 13530786 13536747 hybridization
Lele25g1494 25 11481283 11486975 Lele28g1626 28 16644651 16653938 hybridization