Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1479 ATGACCTATTCTCAGCACTGTTTACGTGATATTATTACTTCTCACCGCACTGGGAAGGCTGGGGGAAAGCAGAATCAACGAAGAGCTTCTTCAATGGCTGTTTCTTCCATATGTTCTTCGTCATTAGTTCCTTATCTTTCACTCATCTCATCTTCTTCCCTGAATTCTAAAGCAAACTTCTCCTTTTCCTTCTTCCACACTGGTACTAACACCTTTAAGCTTCAAAGCTCAAAGCCTCTGCTATCATCAACTAGGGTTTATGCTGCTCCCGAAGCGTTGGATTTCTCAGATTCCGCTGAAGTTCCTCCACTAACCCCAGATGACTCCGACTCCGCCACCATTGAGGTTGGAGACTTGGGGACTCCAAGCACCTCGTCTCTTAGCATTGGGGGAGATGCAGATGCGATGGCACCAAAGCAGAAAATTAGAATCAAACTGAGATCTTATTGGGTTCCCCTGATAGAGGATTCATGCAAGCAGATAATGGATGCAGCAAAAAGTACCAATGCAAAAACCATGGGTCCTGTACCATTACCAACTAAGAAAAGAATCCACTGTGTTCTTAAATCTCCGCATGTGAACAAGGATGCCCGGTTCCACTTCGAGATAAGAACCCATCAGCGTCTCATTGATATTCTATATCCCACTGCCCAAACAATAGATTCTTTGATGCAACTTGATCTTCCTGCTGGTGTTGATGTGGAGGTCAAACTCTAA 717 0.4435 MTYSQHCLRDIITSHRTGKAGGKQNQRRASSMAVSSICSSSLVPYLSLISSSSLNSKANFSFSFFHTGTNTFKLQSSKPLLSSTRVYAAPEALDFSDSAEVPPLTPDDSDSATIEVGDLGTPSTSSLSIGGDADAMAPKQKIRIKLRSYWVPLIEDSCKQIMDAAKSTNAKTMGPVPLPTKKRIHCVLKSPHVNKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1479 238 Pfam Ribosomal protein S10p/S20e 143 237 IPR027486 -
Lele25g1479 238 ProSitePatterns Ribosomal protein S10 signature. 165 180 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lele25g1479 238 SMART Ribosomal_S10_2 143 237 IPR027486 -
Lele25g1479 238 MobiDBLite consensus disorder prediction 97 132 - -
Lele25g1479 238 TIGRFAM rpsJ_bact: ribosomal protein uS10 140 237 IPR001848 GO:0003735|GO:0005840|GO:0006412
Lele25g1479 238 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 85 238 IPR001848 GO:0003735|GO:0005840|GO:0006412
Lele25g1479 238 SUPERFAMILY Ribosomal protein S10 141 238 IPR036838 -
Lele25g1479 238 Hamap 30S ribosomal protein S10 [rpsJ]. 139 238 IPR001848 GO:0003735|GO:0005840|GO:0006412
Lele25g1479 238 Gene3D Ribosomal protein S10 domain 131 238 IPR036838 -
Lele25g1479 238 MobiDBLite consensus disorder prediction 116 130 - -
Lele25g1479 238 PRINTS Ribosomal protein S10 family signature 141 154 IPR001848 GO:0003735|GO:0005840|GO:0006412
Lele25g1479 238 PRINTS Ribosomal protein S10 family signature 176 191 IPR001848 GO:0003735|GO:0005840|GO:0006412
Lele25g1479 238 PRINTS Ribosomal protein S10 family signature 197 211 IPR001848 GO:0003735|GO:0005840|GO:0006412
Lele25g1479 238 FunFam 30S ribosomal protein S10 136 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1479 Lele-ChrLele25 11104282 11106573 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g1479 140 238 Cytoplasmic Ribosomal Protein Gene Family AT3G47370 32.000 3.21e-08 49.3