Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1414 ATGGATCCTGCTCGCTATGGGCTACATCAAGGCTGGGATAATAACAGCGCTCTTGAGGGTTATGGTGCGGCTCATGAGTCAAATTATCGGGGTGGTGGTTCATATAACGAAAGGAGGTTTATAGATGAAAGGTACTCAAGGGATAATATATACCAGAGAGGTGCCTTCCACCGTGATGCTTTGGATAAGGAGGCGTATCCTCCATCAGGACCAGCTGTTGGCCCTTGGAGTGAATCCAAAAGGAGAGGTTATGATGAAGACTATTTGCTGGACAAGGAATCTAGACGTCTTCAGAGGCCTTATTATGATTCATATAATGAGATTGATGCTTTCAGAGATAGGGAGGTTGACATGTATCAAGAATTTGAAAAGTTTCGAGATGGTTATGCCAGCATTGAAAACTATGATGATCGAGGATATGATAAACTTGGTAGGTTTGGGGGACATGATCGTGATGACTATGCATATGATGATTATGGCTATAGGTCTCGTGCAACCCATCATTACAAGGAGGATAGCCATGAGAGGGATATTGATCATGGCCGTTATAGTCATGATTCTGATTATGGGAAAGGTAGAAGAGATAGCAATTGGAGGAGACGTGGATCTCGTGACCGGGAACATGATAGAAGATATCCAAGCAAAGAAAGAGATTTGAGTCCACGTAGGAGGCATGAACGGTCCCGATCCCGGTCTCGGTCTCAATCTCGATCCCGATCTCGATCCCACTCTCATTCTCAGTCACGCTCTCGTTCTCAATCTCATGGATATGATGATCGTCCAAGATCAAGGTCCCCACGAGGTCGAAGTCATGGTCGAAGTTATCGAGAAGACAACTATGCTGACAGTCGATATGAGAGAAGTGAAAAGAGAAGGGATCGAGAAGAGAAGCGGCGTGAGCATTATTCAGTGGCTCCATCTGCCACTATTGTTGTAAAAGGTCTTTCACAAAATGCCAACGAAGAAGATCTATACCAGATTCTTGCAGAATGGGGGCCACTTCGGCATGTTCGTGTTATAAAGGAGCGAAATTCTGGCATTTCTCGTGGATTTGCATTTATTGATTTTCCTTCTGTGGGATCTGCACGAGCAATGATGGACAAACTTGGAGATGATGGTCTTCTTGTGGATGGTAGAAGGCTTTTCTTTGAATATAGTAGTAAGCCAACTGGAGGTCCAGGTGGACCTTTTGGTCAAGAGGGATCTATGAAATCAGGCCATAATCACAAAGGCATTACAGTACCGTCTGATTGGATGTGCACCATATGTGGTTACATCAATTTTGCCCGGCGAACATCCTGCTATCAGTGTAATGAACCACGGAGTGAGGATGCTCCTGCAGCAGATATTACATTGTCAAATCCAACAGCCTTAGGAAAGAAAGGATTGGAGGCAGGTCCAACTCATGTATTGGTTGTTCGTGGATTGGATGAAAATGCTGATGAGGAAATGCTTCGCTATGAGTTCTCCAAACATGCTCCTATTAAGGATCTTCGTCTTGTGAGAGACAAGTTTACTCATGTCTCCAGGGGATTTGCTTTTGTACATTTTTATTCGGTGGAGGATGCCACCAAGGCTCTTGCAGCAACTAATGGAACAACCCTTGAGAAGAATGGACAGATTCTAAGAGTAGCATATGCAAAAAGTATCCTGGGTCCTGGAGCAGGAACGTCAGGTCCTTCCCAGTCAAGTAGTTTAGCAGCTGCTGCTATTGAGGCTGCTACGTTTGCTCAACAGTATGATTCTGTTGGATGGGCTCCTAAAGAATACAACCCAGATGACAAACAATCTACTGGTCAAGAGCAAACTGGTGCAGCACAGACAAATGCTTTGGCTCCACAAACAGGCTTTGTTTGGGATGAGGCATCTGGTTATTACTATGATGCTGCTTCAGGGTTTTACTATGATGGGAATACTGGTCTTTACTATGATGGTAATAATGGGATTTGGTATTCTTATGATCACAATACTCAGCAATATATCCCTTGCACTGATCAAACGGAGAGTAAAGCTCCTAGTAATCAGATTGAACCTTCCAAGGTGTCTGACAGTTCAGGCAGTAAAAAAGTGGTTATTTCTGCGCCTGCTAGTACTGTTACATCTGCTGAGAAGCCATCTTCTTTGGCAGATGCAGTCCAGGCTGCTGCAACTGCTGCCATAGCTGCTGAGAAGAAAGAAAAAGAAAAATTGAAGGAGATAAAGCTTGCTTCCAAAAGCAGTATTCTGGCTAACAAAAAGAAAATGAATAATGTGTTGACAATGTGGAAGCAGAGGAGCCATGAGGGTCAAGCTACTCGTGTAGCTCTAGAAGACAATCACCAATCCACATCCATTGATGATAAGCCTTCTGGATATCCCACAAAGAGCAAGTTCAAAAATGAGACAACAGATACAAGGGACAATACTGTGACCACTTCAGGGATTCCCACTGCGCCTGCTTCTCAGGCTGTTGCTTCAGATTCTCAGGTCCAGCCACGGCCTGTTAGTAATAGCCTTGGAGGCACTCTGATGGGGGTTATACGAGGCTCTGGAAGAGGGATAATTAAATCTGATAGTTCTTACTCAGGACCTACAGCTTCTGCCGCTGCATGTGCATCAGGCGCATCTTCATCAAATGTAGATGCTCCAACAGTTGCAACTCCCTTTAGAACAGATGTCTCTGCACTGGGTTCATATGCTACATCTGTCTCTAGTGGAAGTGGCCGAAGAAGGTTTTCAGAAATGCCTCATTCTGCTTCAGCCCCCAAGGAACAACCTCAAACTACCTACAGGGATCGTGCAGCTGAGAGAAGAAGTTTGTATGGTTCATCATTGTCAGTTGGGGATGATTTGGCTGATCTGAAATCTGGGGCAATGATGTTTTGGTGTCAAATGTCGCTGGTCAATCTTTGGAAAATCTACAATAAGAAAGCTGTAAGCTTTGAAGCTCATAGGTTCACTGGTAACTTTACTCAGATGTGTGCATTGACTTGTGAGAAAAAATTTGTTTTTTACCATATGACCTTTGAAGATCGCGATTTTGCATCGAGGAAGGGTGATCCAATGCCTTTCCCTCCTGGGGTTGGTGGGGGACGTGTGGTTGGAGATGCCAACCTTGATACCTACGAGGTGATTACTGCTGACAAAGCAATTGATGAGAACAATGTTGGCAATCGGATGCTCCGCAACATGGGATGGCAAGAAGGCTTGGGTCTAGGTAAGGATGGCAGTGGAATGACAGAGCCTGTCCAGGCACAAAGCACAGAAAGTAGAGCGGGACTTGGAAGTCAGCAGAAAAAGTTGGATCCTGGCCTTGAGGTTCAGGCAGGAGATAGTTACAAGACGCTTATTCACAAGAAAGCACTTGCCAGATTTTGGGAAATGTCATAG 3369 0.447 MDPARYGLHQGWDNNSALEGYGAAHESNYRGGGSYNERRFIDERYSRDNIYQRGAFHRDALDKEAYPPSGPAVGPWSESKRRGYDEDYLLDKESRRLQRPYYDSYNEIDAFRDREVDMYQEFEKFRDGYASIENYDDRGYDKLGRFGGHDRDDYAYDDYGYRSRATHHYKEDSHERDIDHGRYSHDSDYGKGRRDSNWRRRGSRDREHDRRYPSKERDLSPRRRHERSRSRSRSQSRSRSRSHSHSQSRSRSQSHGYDDRPRSRSPRGRSHGRSYREDNYADSRYERSEKRRDREEKRREHYSVAPSATIVVKGLSQNANEEDLYQILAEWGPLRHVRVIKERNSGISRGFAFIDFPSVGSARAMMDKLGDDGLLVDGRRLFFEYSSKPTGGPGGPFGQEGSMKSGHNHKGITVPSDWMCTICGYINFARRTSCYQCNEPRSEDAPAADITLSNPTALGKKGLEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALAATNGTTLEKNGQILRVAYAKSILGPGAGTSGPSQSSSLAAAAIEAATFAQQYDSVGWAPKEYNPDDKQSTGQEQTGAAQTNALAPQTGFVWDEASGYYYDAASGFYYDGNTGLYYDGNNGIWYSYDHNTQQYIPCTDQTESKAPSNQIEPSKVSDSSGSKKVVISAPASTVTSAEKPSSLADAVQAAATAAIAAEKKEKEKLKEIKLASKSSILANKKKMNNVLTMWKQRSHEGQATRVALEDNHQSTSIDDKPSGYPTKSKFKNETTDTRDNTVTTSGIPTAPASQAVASDSQVQPRPVSNSLGGTLMGVIRGSGRGIIKSDSSYSGPTASAAACASGASSSNVDAPTVATPFRTDVSALGSYATSVSSGSGRRRFSEMPHSASAPKEQPQTTYRDRAAERRSLYGSSLSVGDDLADLKSGAMMFWCQMSLVNLWKIYNKKAVSFEAHRFTGNFTQMCALTCEKKFVFYHMTFEDRDFASRKGDPMPFPPGVGGGRVVGDANLDTYEVITADKAIDENNVGNRMLRNMGWQEGLGLGKDGSGMTEPVQAQSTESRAGLGSQQKKLDPGLEVQAGDSYKTLIHKKALARFWEMS 1122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1414 1122 PANTHER RNA-BINDING PROTEIN 206 1118 - -
Lele25g1414 1122 MobiDBLite consensus disorder prediction 226 248 - -
Lele25g1414 1122 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 471 537 IPR000504 GO:0003723
Lele25g1414 1122 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 310 369 IPR000504 GO:0003723
Lele25g1414 1122 CDD OCRE_SUA_like 612 663 IPR035623 -
Lele25g1414 1122 ProSitePatterns Zinc finger RanBP2-type signature. 418 437 IPR001876 -
Lele25g1414 1122 MobiDBLite consensus disorder prediction 1064 1096 - -
Lele25g1414 1122 MobiDBLite consensus disorder prediction 798 830 - -
Lele25g1414 1122 MobiDBLite consensus disorder prediction 1073 1088 - -
Lele25g1414 1122 ProSiteProfiles Zinc finger RanBP2 type profile. 414 443 IPR001876 -
Lele25g1414 1122 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 308 388 IPR000504 GO:0003723
Lele25g1414 1122 MobiDBLite consensus disorder prediction 761 830 - -
Lele25g1414 1122 ProSiteProfiles G-patch domain profile. 1046 1092 IPR000467 GO:0003676
Lele25g1414 1122 MobiDBLite consensus disorder prediction 167 302 - -
Lele25g1414 1122 CDD RRM1_RRM2_RBM5_like 467 547 - -
Lele25g1414 1122 MobiDBLite consensus disorder prediction 252 302 - -
Lele25g1414 1122 MobiDBLite consensus disorder prediction 893 925 - -
Lele25g1414 1122 CDD RRM1_RRM2_RBM5_like 306 386 - -
Lele25g1414 1122 MobiDBLite consensus disorder prediction 61 80 - -
Lele25g1414 1122 MobiDBLite consensus disorder prediction 587 609 - -
Lele25g1414 1122 SUPERFAMILY RNA-binding domain, RBD 303 406 IPR035979 GO:0003676
Lele25g1414 1122 Gene3D - 414 444 - -
Lele25g1414 1122 SUPERFAMILY Ran binding protein zinc finger-like 408 444 IPR036443 -
Lele25g1414 1122 SMART rrm1_1 470 545 IPR000504 GO:0003723
Lele25g1414 1122 SMART rrm1_1 309 384 IPR000504 GO:0003723
Lele25g1414 1122 SMART G-patch_5 1044 1090 IPR000467 GO:0003676
Lele25g1414 1122 MobiDBLite consensus disorder prediction 167 225 - -
Lele25g1414 1122 MobiDBLite consensus disorder prediction 666 687 - -
Lele25g1414 1122 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 469 549 IPR000504 GO:0003723
Lele25g1414 1122 Pfam OCRE domain 614 662 IPR041591 -
Lele25g1414 1122 Pfam G-patch domain 1047 1088 IPR000467 GO:0003676
Lele25g1414 1122 SMART zf_4 416 440 IPR001876 -
Lele25g1414 1122 SUPERFAMILY RNA-binding domain, RBD 467 555 IPR035979 GO:0003676
Lele25g1414 1122 MobiDBLite consensus disorder prediction 763 777 - -
Lele25g1414 1122 Gene3D - 459 607 IPR012677 -
Lele25g1414 1122 Gene3D - 273 413 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1414 Lele-ChrLele25 10198843 10206189 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g1414 1025 1091 C2H2 Transcription Factor Family AT5G26610 41.791 3.11e-09 57.8