Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1407 ATGACGACTTGCCCCTGTTCCAGACATGAAGTTGTGCCAGCTCAAGTATCTACAGTGGTAAAGGGGACCCCGGTTAATATTGCATACCAATCTGGTGTGTCTGATACCAAGAGACCTAAATCTGTAAGTAGTGATTCTGGAAAATTTGACAGTTCATCTTCGTCTTCTGCTATAAAGACTCCCTATGTATCTGGAGATGTGTCAGGACCTGCGAGATGTTATCGTCAGATAAAGAACAAGCCATACCCGAAATCTCGATTCTGCCGTGGTGTACCTGATCCAAAGATCAGGATTTATGATGTTGGGATGAAAAAGAAAGGGGTTGACGAGTTCCCTTTCTGTGTACATCTTGTATCTTGGGAGAAGGAGAATGTTTCAAGTGAAGCTCTTGAGGCTGCTCGTATAGCATGCACCAAATACATGGCCAAGCATGCAGGGAAAGATGCTTTCCACCTTCGAGTTCGGGTTCATCCTTTCCATGTACTGCGTATCAATAAGATGCTTTCATGTGCTGGAGCTGATAGGCTTCAGACAGGGATGAGAGGTGCTTTTGGGAAGCCACTGGGAACTTGTGCTAGAGTCAACATTGGTCAAGTTCTTCTCTCTGTTCGTTGCAAGGACAGCAGCAGCCACCATGCTCAGGAGGCTCTGCGCCGTGCTAAATTCAAGTTCCCCGGTTGCCAGAAGATCATTGTTAGCAGGAAGTGGGGATTCACCAAATTTAGCCGCGCAGACTATCTGAAGTATAAGTCAGAGGGCCGAGTTGTACCAGATGGAGTCAATGCCAAGCTTCTTGGGTGCCATGGACCTTTGGCCATGCGGCAGCCAGGAAGAGCTTTCATGCCAGCTAATGCATAA 858 0.472 MTTCPCSRHEVVPAQVSTVVKGTPVNIAYQSGVSDTKRPKSVSSDSGKFDSSSSSSAIKTPYVSGDVSGPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACTKYMAKHAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPLGTCARVNIGQVLLSVRCKDSSSHHAQEALRRAKFKFPGCQKIIVSRKWGFTKFSRADYLKYKSEGRVVPDGVNAKLLGCHGPLAMRQPGRAFMPANA 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1407 285 PANTHER 60S RIBOSOMAL PROTEIN L10 70 278 IPR001197 GO:0003735|GO:0005840|GO:0006412
Lele25g1407 285 MobiDBLite consensus disorder prediction 31 59 - -
Lele25g1407 285 CDD Ribosomal_L16_L10e 106 231 IPR016180 GO:0003735|GO:0005840|GO:0006412
Lele25g1407 285 ProSitePatterns Ribosomal protein L10e signature. 173 194 IPR018255 GO:0003735|GO:0005840|GO:0006412
Lele25g1407 285 Pfam Ribosomal protein L16p/L10e 77 231 IPR016180 GO:0003735|GO:0005840|GO:0006412
Lele25g1407 285 Gene3D Ribosomal protein L10e/L16 68 281 IPR036920 GO:0003735|GO:0005840|GO:0006412
Lele25g1407 285 FunFam 60S ribosomal protein L10 67 271 - -
Lele25g1407 285 SUPERFAMILY Ribosomal protein L16p/L10e 70 238 IPR036920 GO:0003735|GO:0005840|GO:0006412
Lele25g1407 285 TIGRFAM uL16_euk_arch: ribosomal protein uL16 70 239 IPR001197 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1407 Lele-ChrLele25 10105413 10110237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g1407 70 285 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 85.185 5.68e-138 386