Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1406 ATGGGGAAGCAACCGGTTAGGATGAAGGCCGTGGTCTATGCTCTTTCACCTTTCCAGCAGAAGGTTATGACTGGTCTCTGGAAGGATTTGCCTTCCAAGATTCACCACAAGATCTCTGAGAATTGGATCAGTGCCACACTCTTGTTCGGTCCTCTTGTCGGCACCTACACGTATGTTCAAAACTACCAGGAAAAGGAGAAGCTGGCTCACAGGTGTAATGTCACTAGTATTAGAGCTCGGGGTGGTATTGTAACTTCTGTTTTGAAGGATCTGGGGATTTCAAAGATTTCAAAAAAATTATCTGAACTTGTCACACCAGAGAAGAAGGCTCGTCCGCAACGTCGACCGAAACAAAAATCAAATAGTAATGATGTCATCGAGCCAAGACGCTCTTCTCGTGTGCGAAACTCTGTTCCTTCGTATCGTGAGGAGGGTCTCCCAACTAGATTTTGCCAAGATCATCTTCCACAGACTGCATGTGACATGATTTTAGAGGATGAAGATGGCTCAGAGTTTGAGGCCGTTTCAATTGACAATAGAACTGGGATTAGTGGAGGCTGGAGAGGATTTGCATTGGATCATAAGTTGGATAATGGTGATGCACATATTTTTGCATTAGTTGAACCTACCAGATTTAAGATTTACATTGTCAGAGCCTTTCCAGAATCAGCTGAAGATGGACAGGAGATTTTAGATGAACAAGCTGATACTTGTGCAGCCAAGAAGCACAAATCACAATCAAACAAGCACAAATTCCTAAAAAAAACTGCAAATTCTCAGGAACACAAAGCAGAAAATAACGTTGACGATGAAATCGAGCCACAAGGGCAAAACACGACCAGGAAAACTAGGTTTTCTCACAGAAAATCTCAAAGAATCTAA 882 0.4263 MGKQPVRMKAVVYALSPFQQKVMTGLWKDLPSKIHHKISENWISATLLFGPLVGTYTYVQNYQEKEKLAHRCNVTSIRARGGIVTSVLKDLGISKISKKLSELVTPEKKARPQRRPKQKSNSNDVIEPRRSSRVRNSVPSYREEGLPTRFCQDHLPQTACDMILEDEDGSEFEAVSIDNRTGISGGWRGFALDHKLDNGDAHIFALVEPTRFKIYIVRAFPESAEDGQEILDEQADTCAAKKHKSQSNKHKFLKKTANSQEHKAENNVDDEIEPQGQNTTRKTRFSHRKSQRI 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1406 293 Pfam B3 DNA binding domain 141 217 IPR003340 GO:0003677
Lele25g1406 293 Gene3D - 112 220 IPR015300 -
Lele25g1406 293 Pfam Cytochrome b-c1 complex subunit 8 1 71 IPR020101 GO:0005750|GO:0070469
Lele25g1406 293 CDD B3_DNA 146 218 IPR003340 GO:0003677
Lele25g1406 293 SUPERFAMILY DNA-binding pseudobarrel domain 145 218 IPR015300 -
Lele25g1406 293 SMART B3_2 133 220 IPR003340 GO:0003677
Lele25g1406 293 MobiDBLite consensus disorder prediction 104 131 - -
Lele25g1406 293 MobiDBLite consensus disorder prediction 241 293 - -
Lele25g1406 293 Gene3D - 2 71 IPR036642 GO:0005750|GO:0006122
Lele25g1406 293 MobiDBLite consensus disorder prediction 254 270 - -
Lele25g1406 293 ProSiteProfiles B3 DNA-binding domain profile. 129 220 IPR003340 GO:0003677
Lele25g1406 293 PANTHER CYTOCHROME B-C1 COMPLEX SUBUNIT 8 1 93 IPR020101 GO:0005750|GO:0070469
Lele25g1406 293 MobiDBLite consensus disorder prediction 104 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1406 Lele-ChrLele25 10091623 10103847 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g1406 1 71 Chloroplast and Mitochondria Gene Families AT3G10860 78.873 1.95e-37 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lele25g1406 B3 1.3e-09 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1406 25 10091623 10103847 Lele27g0684 27 14829527 14831048 hybridization
Lele25g1406 25 10091623 10103847 Lele28g1418 28 10248218 10250088 hybridization