Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1397 ATGCTTGCCGCTGCTTCTTTTACTTCCAAACGCATTCGAGCTTCGGAGTTTTTTCAACGTGATGGTAGTAGACCCGGGATGGTATCCCGCGGTGCCACTGCTATAAGTTATTTTGAAAATTCTTCTTTTGTTTATTTGAGCAGGAACTATGGGATTAGCGATCGAGTTCGCTCGATTGTTAGCCTTTCTGGCATCAGCACCTTCCCTAGTCGTAGTAGGATTAGTAGAGAGTGCTTTAGTGTCAATCCGACTGCTCCCAGAAGATCTACAAGTTTACTTCATAGTATAAAGGGGTTTCTCTCTGATTCATCATCTTCTAATTCCTATTCTTCACTATATGGCCGCGTAACCAGACCAGGCTTTTCACACCCTGGTTCAACGGTTGACGGACGAGCATTATTTTCAACTTTAGCTAAAACTGATGATGGAACGTCCTCAAAGAAGATCGAGACCCAGAATCAAAAAACTTCTACCACAATTGCTAAAACTTCTTCAGGGGAACAAGTTGCTGACATTAAAATTATGCGTACACTTGCGAGTTACTTGTGGATGAAGGATAATCTTGAATTCCGATTCCGGGTTATTGCTTCTTTGGGTTTTCTTATTGGTGCTAAGGTTCTGAATGTTCAGGTCCCTTTCTTATTCAAGCTTGCAGTTGATTGGTTGACGACTGCTAACGGCAATGCTGGTGATCTTGCTTCTTTTGCGACTGCAAATTCAACTCTGTTAGCTCTTTTCGCAACTCCAGCATCTGTGTTAATAGGATATGGAATTGCTCGTTCAGGAGCTTCTGCTTTCAATGAACTGCGTACTGCTGTATTCTCTAAGGTGGCATTGCGAACAATTCGATTAGTATCTAGAAAGGTGTTCTTACATTTACATGAGCTTGACCTACGCTATCATCTAAGTCGAGAAACTGGAGCATTAAATAGAATAATTGATCGTGGTAGTCGTGCAATAAATTTTATACTCTCATCAATGGTGTTCAACGTAGTACCCACTATATTAGAGATATCTATGGTATCAGGTATACTGGCTTACAAATTTGGAGCACCTTTTGCATTCATCACATCCTTATCAGTTGCTGCTTATGTTATTTTTACACTGACTGTGACACAGTGGAGGACTAAATTCAGGAAGATCATGAATAAAGCTGATAATGATGCGAGTACCAGGGCAGTCGATTCACTCATCAATTATGAGACTGTCAAATATTTCAATAATGAAGATTATGAAGGTGAAAAATATGATGAGTACCTAAAGAGGTATGAAGATGCTGCTCTGAAAACACAACGCAGTCTTGCTTCTCTGAACTTTGGTCAAAATGTGATATTTAGTACTGCACTTTCTACGGCAATGGTGTTGTCTTCTCATGGGATTATGAGTGGCCAGATGACTGTTGGTGATTTGGTGATGGTGAATGGGCTCCTCTTCCAACTGTCTCTTCCACTCAATTTCCTTGGCAGTGTTTATCGTGAGACTATACAGAGTTTAGTTGACATGAAGGCAATGTTTCAGTTACTGGAGGAAAGAGCTGATGTTAGGGATAAAGATAATGCAAAGCCGCTGGAATTGAATGGAGGGAGCATAGAGTTTGAAAATGTGCACTTCAGTTACCTTGCAGAGAGAAAAATACTTGATGGAATATCTCTGGTTGTGCCAGCTGGAAAAAGTGTGGCAATTGTTGGAACTAGTGGAAGTGGTAAATCAACCATTCTTAGATTGCTCTTCAGGTTTTTTGACCCTCATTCTGGAAGTATAAAGATAGATGGTCAAAATATCCAGGATGTAACCCTTGATAGTCTTCGGAAGTCTATTGGTGTTGTTCCACAAGATACTGTACTTTTCAATGATACAATATTTCACAACATTCATTATGGTCGACTTTCAGCCACTAAAGAGGAAGTCTATAAAGCTGCTCAACAAGCAGCAATTCACGACACTATCATGAATTTTCCTGAAAAGTATTCAACAGTTGTGGGAGAGCGAGGACTCAAGTTAAGCGGTGGCGAGAAGCAACGTGTTGCCTTGGCTCGTGCGTTTTTGAAAGCACCTCCAATTCTGTTATGTGATGAAGCTACGAGTGCACTTGACAGCACAACAGAAGCAGAGATATTAAATGCTTTGAAATCTTTAGCAAATAATCGCACTTCCATATTCATTGCTCACAGGCTTACTACTGCAATGCAGTGTGATGAGATCATTGTGTTGGAAAATGGAAAGGTGGTTGAACAAGGACCACATGAATTGCTCTTATCTAGGGCAGGAAGATATGCACAACTTTGGGCCCAGCAAAATAACACGGTTGATGCTGCAGCGATGAAAGCCGGGGCATAA 2337 0.4091 MLAAASFTSKRIRASEFFQRDGSRPGMVSRGATAISYFENSSFVYLSRNYGISDRVRSIVSLSGISTFPSRSRISRECFSVNPTAPRRSTSLLHSIKGFLSDSSSSNSYSSLYGRVTRPGFSHPGSTVDGRALFSTLAKTDDGTSSKKIETQNQKTSTTIAKTSSGEQVADIKIMRTLASYLWMKDNLEFRFRVIASLGFLIGAKVLNVQVPFLFKLAVDWLTTANGNAGDLASFATANSTLLALFATPASVLIGYGIARSGASAFNELRTAVFSKVALRTIRLVSRKVFLHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPFAFITSLSVAAYVIFTLTVTQWRTKFRKIMNKADNDASTRAVDSLINYETVKYFNNEDYEGEKYDEYLKRYEDAALKTQRSLASLNFGQNVIFSTALSTAMVLSSHGIMSGQMTVGDLVMVNGLLFQLSLPLNFLGSVYRETIQSLVDMKAMFQLLEERADVRDKDNAKPLELNGGSIEFENVHFSYLAERKILDGISLVVPAGKSVAIVGTSGSGKSTILRLLFRFFDPHSGSIKIDGQNIQDVTLDSLRKSIGVVPQDTVLFNDTIFHNIHYGRLSATKEEVYKAAQQAAIHDTIMNFPEKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVVEQGPHELLLSRAGRYAQLWAQQNNTVDAAAMKAGA 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1397 778 CDD ABCC_ATM1_transporter 530 765 - -
Lele25g1397 778 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 519 765 IPR027417 -
Lele25g1397 778 Gene3D - 521 776 IPR027417 -
Lele25g1397 778 Pfam ABC transporter 546 695 IPR003439 GO:0005524
Lele25g1397 778 Gene3D ABC transporter type 1, transmembrane domain 181 520 IPR036640 GO:0005524|GO:0016020
Lele25g1397 778 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 115 761 IPR039421 -
Lele25g1397 778 ProSitePatterns ABC transporters family signature. 667 681 IPR017871 GO:0005524|GO:0016887
Lele25g1397 778 FunFam ABC transporter B family member 25 522 776 - -
Lele25g1397 778 Pfam ABC transporter transmembrane region 195 483 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lele25g1397 778 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 530 764 IPR003439 GO:0005524
Lele25g1397 778 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 195 496 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lele25g1397 778 CDD ABC_6TM_ATM1_ABCB7 197 504 - -
Lele25g1397 778 SUPERFAMILY ABC transporter transmembrane region 189 509 IPR036640 GO:0005524|GO:0016020
Lele25g1397 778 SMART AAA_5 555 741 IPR003593 -
Lele25g1397 778 FunFam ATP-binding cassette sub-family B member 7 166 518 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1397 Lele-ChrLele25 10006341 10016566 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g1397 366 776 Calmodulin-binding Proteins AT2G36910 35.308 5.15e-63 228