Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1348 ATGTGTTGTACACGTGCAACTGGGCTTTTGGTTGCTTCTGCATTCTCTCATTCATTAACACACTCTGCCAATTGCACGCCTTACGGAGTGAGAAGAAACACAGTCACAGACACAGTGAAGAATGAAGAAAAGAAAAGAGAGCAAACAACGACAGGTTCAGAAGTAGCAGTACTCGTTGAAACCATAAAAGGGAAGAGAGACTTCAGAGTTCAGACCCCAATTCCCTCCCTCCCTCTCTCGTTCCATGAAATGGGAGAAGAGGCTTTGACAATATCAACGACAGTCCCCTTTGACAGAGCAGTTGAACAGGCAATTGTATCTATAAAGAAAGGTGCATACTTACTAAAGTGTGGACGCAGAGGGAAGCCGAAGCTCTGCCCATTCAGACTTTCTCAGGATGAGAAAAATTTGATTTGGTACTCCAGACAGCGGGAAAAACACTTGCGCTTGAGTTTGGTCATGAAAATTATTCAAGGACAGGGAAATATAAAGTCCCAAAAGCTAAATCAAAATGGGAAGGAGTGCCATTCATTTTCTCTAATTTATGCTAATGGTGAACGCTCACTTGATCTGATATGCAAGGACAAAGCACAGGCTACTTCTTGGTTTGTGGGTTTGAAAGCTATAATTTCTCAGTCCCAACACCAAAAACCTTTTAGTAGTTTAAGAAGCTGCAAAGGTATACAGAGTTGTGTCAGCAGTCCAGCTGGAATCTTACGAAGAAAGAAAAACCTTGGCCTTCTGGAGGATACTGCTGAATTTACAAAGGTACACAGCGTATGTGCAAGTCCCACTTTGTCACTTTCAGAGAGGTGCTTTTCCGATGGCTTATCATATACTTGTGATAGCTTTTATTCTTCGGAGTCTTTCCCATCTGATACTCAAAGGGTAGTTGATAATTCAGTTCCAAATTCTCCATACATTGATCCAGATATTCTTAGCAAGAGTAAATCAACATATGTTGATACAGAATATCAGAAGGATTTGCCCTATAGGTGTCTTGTGCCTGCTACCTCTCCACGTGTAGCAAATAACAACACATTGAAAGATGTCATGATATGGGGTGGGGGAATTATCGGAATTGCAGGGAGTGCCAATGATCAGCTTGTCGACCAACTGGGAGCTCATGTGCTATTGCCAAAGTTACTAGAATCCACCATGATGTTAGACGTAGAAAACATAGCATTAGGAGAAAAACATGCTGCACTTATTACAAAACAAGGCGAAGTGTTAAGCTGGGGTGAAGGGAAAGGAGGAAGGCTGGGGCTGAAAATTGATATAGATATACGCTCACCAAAAATTGTTGATTCTCTTAATGGGGTCCATGTAAAGGATGTTGCCTGTGGCGAGTATCACACATGTGCTTTAACGAATTCTGGCGAAGTATATGCGTGGGGAAATGATGGTTGTGTTGCAGATCAGTTTGGTGAAGGGAGATTCAAAACTGGATGGATACCAAACAAACTCTCCGGTCCTTTAGATGGTATTATTATATCACATGTTACTTGCGGGGAATGGCATACGGCGATTGTCTCGTCTTGTGGACAGCTATTTACATACGGGGATGGTACATTTGGATCTCTCGGGCATGGGAATTCTCAGAGCATTTGTCAACCAAAAGAAGTTGAATCTCTTAAGGGTCTATGGGTGAGGTCCGTTGCTTGTGGATCATGGCACACAGCAGCAATTGTTGAAGTCATGGTTGACCGGTTTAGGTATAATACTGGTAAGCTGTTTACTTGGGGTGATGGAGAGAAAGGGATGCTTGGCCATGCCGATAACGGGAGGAAGCTTTTGCCAACCTGTGTTTCACAACTTCTGGATTATGACTTTGTTCAAGTATCTTGTGGAAGAATGTTGACTGTGGCACTTAATAATATGGGCAAAGTTTTCACAATGGGAAGTGCAGTGCACGGACAGCTAGGAAATCCACGTGCCAAGGACAAATCAGTGACAATCGTTGAAGGACTACTTAAACAGGAGTTTGTGAAAGAGATATCCTCGGGTTCATATCATGTTGCTGTCTTGACATCTTCCAGGAGTGTCTATACATGGGGAAAGGGTGCAAATGGACAGCTAGGGTTAGGTGACACTGAAGAAAGATACTCGCCGTCTTTTGTTGTGGCTCTAAGAGACTGGCAGGTAGAGAGTATTGCTTGTGGACCGAGCAGCACGGCTGCGATCTGTTTACACAAACCGATTTCTATTAGTGATCAGTCAGCTTGTAGTGGTTGTAAATCGCCTTTTGGATTTACAAGGAAGAAGCATAATTGCTATAACTGTGGCCTCCTATTTTGTCATCCATGTAGTTGTAAAAAGGTTACTAATGCAGCTCTAGCACCGAATAAGAGCAAGGCTTTTCGGGTTTGTGACCAATGCTTCAATAAACAGCTTGGAAGTACACCTTCCGTTGTGGCATCAAGGTCCATAAATTACAACTCACAGAAGCTGCTGAAGAATCAGAACAAGTTCACCGATTTTACGGAAGATAGAGGAGAAACAACAGTGACACAGGGTCCACTGTTGTCTCTCGGTCAATCATGCTACAAAAGAAGCATGACAGGTGGAAGAAAGGACTGGAAAACCCAACAAGAAATCCAGAATGATTTAGAAAATATTTCTTCTGTTTCTGGTGGAGCGCCGAAATGGGGGCAAGTTCCATGTCCTGCCCTGTTTGAAAACTGTACAGAAAATTCTGTTCCATCATTTAGAAGTAAATTAGGTTCTCTTACTTCAGTAAATTTAGAGTCTACTTTATCCAACAATTCTTGTGGAGAGAAAGATACCGCAAAGTCTGATAATAAATTGATAGAAGAAGTTCAGAGGCTGAGAGCTGAGGCTAGAATCCTTGAAGAGCAATGCGAGAAAGGAAACCGTAAGTTACAAGAATGTCATAAAAAGATTGAGGAGACTTGGCTCTTGGCAAAGGAGGAGTCTGCAAAGAGCAAGGCAGCAAAAGAGGTCATAAAAGCATTGGTGTTAAGGCTGCAAACGCTAGCAGATAAACCCACAGCTGGAAAAGAAGGAAAGCTTGGGATACAGGAATGCCTCTCAAGTTTAACACCCATTCGTACGGATATCAATTATCCGAGGGATGGCAATGCGGACAGTCTATCAAATTCCCCTATAGTGTTCTCTGACTCATTAAAATCCAGACTTGCGAGAAGTTCAATCCTTAAAAGTGATAGATCAAAGGAGGATTCTCAGTTAACTAAAGCAGAATCTCATGAAGATGGCTCTGAGAGCTTGAAGGTTGAATGGGTAGAACAGTATGAGCCTGGTGTATACATCACTTTAACTGCCTTGCCATGTGGGCAGAAGGGCCTTAAGAGAGTTAGATTCAGCCGGAAACAATTTTCTGAGAAGGAAGCCGGGAGATGGTGGGACAAGAATCAAGCCAGAGTGTATCAGAAGTATGGGATTGAAGGATATATACAGACAAGCCAAAACTGGGAGAAGGGCTAA 3465 0.4268 MCCTRATGLLVASAFSHSLTHSANCTPYGVRRNTVTDTVKNEEKKREQTTTGSEVAVLVETIKGKRDFRVQTPIPSLPLSFHEMGEEALTISTTVPFDRAVEQAIVSIKKGAYLLKCGRRGKPKLCPFRLSQDEKNLIWYSRQREKHLRLSLVMKIIQGQGNIKSQKLNQNGKECHSFSLIYANGERSLDLICKDKAQATSWFVGLKAIISQSQHQKPFSSLRSCKGIQSCVSSPAGILRRKKNLGLLEDTAEFTKVHSVCASPTLSLSERCFSDGLSYTCDSFYSSESFPSDTQRVVDNSVPNSPYIDPDILSKSKSTYVDTEYQKDLPYRCLVPATSPRVANNNTLKDVMIWGGGIIGIAGSANDQLVDQLGAHVLLPKLLESTMMLDVENIALGEKHAALITKQGEVLSWGEGKGGRLGLKIDIDIRSPKIVDSLNGVHVKDVACGEYHTCALTNSGEVYAWGNDGCVADQFGEGRFKTGWIPNKLSGPLDGIIISHVTCGEWHTAIVSSCGQLFTYGDGTFGSLGHGNSQSICQPKEVESLKGLWVRSVACGSWHTAAIVEVMVDRFRYNTGKLFTWGDGEKGMLGHADNGRKLLPTCVSQLLDYDFVQVSCGRMLTVALNNMGKVFTMGSAVHGQLGNPRAKDKSVTIVEGLLKQEFVKEISSGSYHVAVLTSSRSVYTWGKGANGQLGLGDTEERYSPSFVVALRDWQVESIACGPSSTAAICLHKPISISDQSACSGCKSPFGFTRKKHNCYNCGLLFCHPCSCKKVTNAALAPNKSKAFRVCDQCFNKQLGSTPSVVASRSINYNSQKLLKNQNKFTDFTEDRGETTVTQGPLLSLGQSCYKRSMTGGRKDWKTQQEIQNDLENISSVSGGAPKWGQVPCPALFENCTENSVPSFRSKLGSLTSVNLESTLSNNSCGEKDTAKSDNKLIEEVQRLRAEARILEEQCEKGNRKLQECHKKIEETWLLAKEESAKSKAAKEVIKALVLRLQTLADKPTAGKEGKLGIQECLSSLTPIRTDINYPRDGNADSLSNSPIVFSDSLKSRLARSSILKSDRSKEDSQLTKAESHEDGSESLKVEWVEQYEPGVYITLTALPCGQKGLKRVRFSRKQFSEKEAGRWWDKNQARVYQKYGIEGYIQTSQNWEKG 1154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1348 1154 SUPERFAMILY FYVE/PHD zinc finger 737 801 IPR011011 -
Lele25g1348 1154 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 628 679 IPR000408 -
Lele25g1348 1154 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 680 731 IPR000408 -
Lele25g1348 1154 SUPERFAMILY PH domain-like 100 210 - -
Lele25g1348 1154 CDD PH_PLC_plant-like 99 211 - -
Lele25g1348 1154 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 515 566 IPR000408 -
Lele25g1348 1154 Pfam FYVE zinc finger 738 796 IPR000306 GO:0046872
Lele25g1348 1154 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 408 459 IPR000408 -
Lele25g1348 1154 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 460 514 IPR000408 -
Lele25g1348 1154 SMART fyve_4 730 799 IPR000306 GO:0046872
Lele25g1348 1154 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 576 627 IPR000408 -
Lele25g1348 1154 Gene3D - 100 218 IPR011993 -
Lele25g1348 1154 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 553 563 IPR000408 -
Lele25g1348 1154 Gene3D - 341 567 IPR009091 -
Lele25g1348 1154 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 145 996 - -
Lele25g1348 1154 ProSiteProfiles BRX domain profile. 1085 1140 IPR013591 -
Lele25g1348 1154 Pfam Regulator of chromosome condensation (RCC1) repeat 576 624 IPR000408 -
Lele25g1348 1154 Pfam Regulator of chromosome condensation (RCC1) repeat 515 563 IPR000408 -
Lele25g1348 1154 Pfam Regulator of chromosome condensation (RCC1) repeat 628 676 IPR000408 -
Lele25g1348 1154 Pfam Regulator of chromosome condensation (RCC1) repeat 682 728 IPR000408 -
Lele25g1348 1154 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 743 798 IPR013083 -
Lele25g1348 1154 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 736 798 IPR017455 -
Lele25g1348 1154 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 349 407 IPR000408 -
Lele25g1348 1154 SUPERFAMILY RCC1/BLIP-II 349 732 IPR009091 -
Lele25g1348 1154 Gene3D - 568 742 IPR009091 -
Lele25g1348 1154 Coils Coil 933 967 - -
Lele25g1348 1154 Pfam Transcription factor regulating root and shoot growth via Pin3 1085 1139 IPR013591 -
Lele25g1348 1154 PRINTS Chromosome condensation regulator RCC1 signature 350 366 IPR000408 -
Lele25g1348 1154 PRINTS Chromosome condensation regulator RCC1 signature 675 696 IPR000408 -
Lele25g1348 1154 PRINTS Chromosome condensation regulator RCC1 signature 460 476 IPR000408 -
Lele25g1348 1154 PRINTS Chromosome condensation regulator RCC1 signature 501 517 IPR000408 -
Lele25g1348 1154 PRINTS Chromosome condensation regulator RCC1 signature 517 531 IPR000408 -
Lele25g1348 1154 PRINTS Chromosome condensation regulator RCC1 signature 617 635 IPR000408 -
Lele25g1348 1154 Pfam Regulator of chromosome condensation (RCC1) repeat 443 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1348 Lele-ChrLele25 9298704 9307077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g1348 986 1144 Major Intrinsic Protein MIP AT1G31880 27.778 3.15e-12 67.8