Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1345 ATGGCTGCAGCTTTTATTTCTACCATGCAAGATCAGATATGTCTGGCTTTGTGCAAACATCTTTCTTCTTTGGCTACATGGCTTGCATTTGCTATGGTCTCTTCCTCATGCTTGAGCAGTTGGTTTCAGCGCATCTTTAATCCTTGTCTGTCGCCCTTTGCTCTTTCCCTCTCTTCTTCTTGCCTTCACCCTTTTCTCTCTCTTGAGCTCTCAGTGAAGTCCATGGAAATCTCACTTGCTCTGTTTTTCACACTAACACTTCTACTCACACTTTCTTCAACAGTCACTTCCCATTACTCCTCCTTCTCCTCCAATTCTTCTTCTGCTCAGCATTCTTCATCTTCCTCTTCGCTCTCCGAATGGCGATCTGCGCACGCTACTTACTACGCCGCCGCAGATCCTAGGGATGCGGTAGGCGGCGCGTGCGGATATGGTGACCTTGTCAAAGCTGGTTACGGCATGGGCACTGTGGGTCTCAGTGAGTCTCTCTTTGAGCGGGGCCAGATCTGTGGTGCCTGCTTTGAGCTCCGCTGCGTCGATGACCTTCGCTGGTGTATCCCAGGAACCTCCATTATCGTCACTGCAACGAATTTCTGTGCGCCCAACTATGGCTTCACCGCCGAGGGAGGTGGCCGTTGTAACCCTCCCAACCAGCATTTCGTGCTTCCGATTGAAGCGTTCGAGAAGATCGCTATTTGGAAAGCTGGGAACATGCCGGTTCAGTATCGCAGGATAAAGTGCCGAAAGCAAGGAGGAATGCGTTTTACAGTCACAGGTTCTGGGATTTATATATCAGTGCTGATCCGCAATGTAGCAGGCGCTGGGGATATAGTGGCGGTGAAGGTGAAGGGCTCAAGAACAGGTTGGCTTCCAATGGGTCGAAATTGGGGCCAAAACTGGCATGTGAATGCATTACTACAGAATCAACCTCTTTCATTTGAGGTCACTGGTAGTGATGGCCTAACAGTGACGTCTTACAATGTTGCTCCCAAAGATTGGAGCTTCGGACAAACCTTTGAAGGCAAGCAATTTGAGTCATAA 1041 0.4938 MAAAFISTMQDQICLALCKHLSSLATWLAFAMVSSSCLSSWFQRIFNPCLSPFALSLSSSCLHPFLSLELSVKSMEISLALFFTLTLLLTLSSTVTSHYSSFSSNSSSAQHSSSSSSLSEWRSAHATYYAAADPRDAVGGACGYGDLVKAGYGMGTVGLSESLFERGQICGACFELRCVDDLRWCIPGTSIIVTATNFCAPNYGFTAEGGGRCNPPNQHFVLPIEAFEKIAIWKAGNMPVQYRRIKCRKQGGMRFTVTGSGIYISVLIRNVAGAGDIVAVKVKGSRTGWLPMGRNWGQNWHVNALLQNQPLSFEVTGSDGLTVTSYNVAPKDWSFGQTFEGKQFES 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1345 346 PRINTS Expansin signature 251 263 IPR002963 GO:0009664
Lele25g1345 346 PRINTS Expansin signature 298 319 IPR002963 GO:0009664
Lele25g1345 346 PRINTS Expansin signature 151 165 IPR002963 GO:0009664
Lele25g1345 346 PRINTS Expansin signature 178 189 IPR002963 GO:0009664
Lele25g1345 346 PRINTS Expansin signature 227 240 IPR002963 GO:0009664
Lele25g1345 346 PRINTS Expansin signature 191 201 IPR002963 GO:0009664
Lele25g1345 346 PRINTS Expansin signature 210 227 IPR002963 GO:0009664
Lele25g1345 346 PRINTS Expansin signature 327 343 IPR002963 GO:0009664
Lele25g1345 346 PRINTS Expansin signature 263 284 IPR002963 GO:0009664
Lele25g1345 346 PANTHER EXPANSIN-A15 84 344 IPR002963 GO:0009664
Lele25g1345 346 SUPERFAMILY Barwin-like endoglucanases 120 270 IPR036908 -
Lele25g1345 346 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 262 341 IPR007117 -
Lele25g1345 346 Gene3D - 104 248 IPR036908 -
Lele25g1345 346 Pfam Expansin C-terminal domain 253 330 IPR007117 -
Lele25g1345 346 PRINTS Expansin/Lol pI family signature 120 135 IPR007118 GO:0005576
Lele25g1345 346 PRINTS Expansin/Lol pI family signature 160 178 IPR007118 GO:0005576
Lele25g1345 346 PRINTS Expansin/Lol pI family signature 327 341 IPR007118 GO:0005576
Lele25g1345 346 PRINTS Expansin/Lol pI family signature 235 251 IPR007118 GO:0005576
Lele25g1345 346 PRINTS Expansin/Lol pI family signature 138 156 IPR007118 GO:0005576
Lele25g1345 346 PRINTS Expansin/Lol pI family signature 289 303 IPR007118 GO:0005576
Lele25g1345 346 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 139 252 IPR007112 -
Lele25g1345 346 SMART dpbb_1 156 242 IPR007112 -
Lele25g1345 346 Gene3D - 252 344 IPR036749 -
Lele25g1345 346 Pfam Lytic transglycolase 157 242 IPR009009 -
Lele25g1345 346 SUPERFAMILY PHL pollen allergen 249 341 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1345 Lele-ChrLele25 9264546 9269230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g1345 120 346 Expansin Gene Family AT3G03220 84.581 1.46e-149 420