Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1328 ATGAGACCTAACTTGGACCTTGAAGTGGAGGCTTCTGCGGAAAATGAATCTGAAATTAGCAGCCAGGTTGCATCCAACATTTTCATTCATGAAATATCTGCAGGTCCCTCAAGTGACAGCCTCAACAATGCATCAGACAACACAAACACCATAGGATTTCAACTAAATAATGCAGATCCTCTTTCACTTGACTTAACTCTCAGCTTCAATAACAATGATCTAGGCCCGGCCGGGGAATCCATAGGACTCTCATTCTCAAGCACCAGTGAGAGTAGCAATGAACCTGCCTCTCAAACCACATCAGCCACCATCCAAAGAGTCTTCTCTTGCAACTACTGTCAGCGCAAGTTCTTCAGCTCGCAGGCTCTTGGTGGCCACCAGAATGCACACAAGAGGGAAAGAACATTAGCAAAGAGAGCTATGAGAATGGGGTTTTTCTCTGATAGGTATGCAAGTTTAGCATCCCTCCCTCTTCATGGTTCTTTCAGGTCCTTAGGAATAAAAGCACACTCCTCACTTCACCATGGCTTTTCACCATCAATGGTGAGGCCTTATGAGATTAAAAGCAATTCAAGATTTGATCAAGGGTATGTTGGAATGCCTATGTTCCTGGAGGACGATGAGGCAGAACTGCTATGGCCTGGTAGTTTCCGTCGGGTTGGAGAGTTAAGTGATGATGATAACACTCATCATCATCATCATCACCACCAGAAGTTCGTGGTCACTGGAAGTACAAATTTGAGTTTGGCAGAAGTGAATCCAGAAGTACACCTTGAGCTAGAGGACTCAACCCCGGATTTAACATTGAAACTTTGA 816 0.4461 MRPNLDLEVEASAENESEISSQVASNIFIHEISAGPSSDSLNNASDNTNTIGFQLNNADPLSLDLTLSFNNNDLGPAGESIGLSFSSTSESSNEPASQTTSATIQRVFSCNYCQRKFFSSQALGGHQNAHKRERTLAKRAMRMGFFSDRYASLASLPLHGSFRSLGIKAHSSLHHGFSPSMVRPYEIKSNSRFDQGYVGMPMFLEDDEAELLWPGSFRRVGELSDDDNTHHHHHHHQKFVVTGSTNLSLAEVNPEVHLELEDSTPDLTLKL 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1328 271 FunFam Zinc finger protein 2 85 154 - -
Lele25g1328 271 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 45 197 IPR044246 GO:0009788
Lele25g1328 271 SUPERFAMILY beta-beta-alpha zinc fingers 105 135 IPR036236 -
Lele25g1328 271 Gene3D Classic Zinc Finger 85 151 - -
Lele25g1328 271 ProSiteProfiles Zinc finger C2H2 type domain profile. 108 135 IPR013087 -
Lele25g1328 271 ProSitePatterns Zinc finger C2H2 type domain signature. 110 130 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1328 Lele-ChrLele25 9083100 9083915 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g1328 90 271 C2H2 Transcription Factor Family AT1G66140 47.887 2.04e-47 157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1328 25 9083100 9083915 Lele25g1328 25 9083100 9083915 CCT
Lele25g1328 25 9083100 9083915 Lele26g1339 26 9056498 9057319 CCT
Lele25g1328 25 9083100 9083915 Lele27g0758 27 15694670 15696170 CCT
Lele25g1315 25 8973583 8975394 Lele25g1328 25 9083100 9083915 CCT
Lele25g1328 25 9083100 9083915 Lele01g1102 01 6471015 6472569 CCT
Lele25g1328 25 9083100 9083915 Lele02g1135 02 7271917 7282026 CCT
Lele25g1328 25 9083100 9083915 Lele03g1104 03 6447188 6449111 CCT
Lele25g1328 25 9083100 9083915 Lele04g1120 04 7065985 7067950 CCT
Lele25g1328 25 9083100 9083915 Lele25g1328 25 9083100 9083915 ECH
Lele25g1328 25 9083100 9083915 Lele27g0758 27 15694670 15696170 hybridization