Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1325 ATGGTTTTGTCGGGGACTTTAAGGAAAGTTTTCAGACGTGCCCACAAGGAGAAAATCCGTCGCGGCGGAGAACTCGACTTGGAACCTGTGATTCCGACTCATTTCCGGTGCCCTGTGAGCCTTGAACTGATGAAAGACCCGGTGACGCTCTGCACTGGAATCACCTACGACAGGGACAGCATCGACAGGTGGATTGAATCTGGGAACAACACTTGCCCCGTGACCAATCAGGTTCTTTCGAGCACGCACATGATCCCAAATCACGCCATTCGGAGAATGATCCAGGACTGGTGCGTGGAGAACCAGTCTTACGGGATTGAAAGGATCCCCACTCCGAGGATCCCCGTCGCGCCGTACGAGGTTTCCGAGACTTGTTCGAGGATAGTTGCCGCCGCTCGTAATGGGGATGTCAAAAAGTGTCAAGAATTGGTGGGGAAGATTAAGAATTGGGGTAAAGAGAGCGAGAGGAACAAGAGGTGTATAGTGGAAAATGGTGCTTGTGCAGTGTTAGCCTCTGCCTTTGATTCTTTCTCACGTGGGACCATCGAGGAAAACAAGGTAGTTCTAGAGGAGATCTTGGGGTTACTCCCAGCAATGATGAATCCATCTCAAGAAGATGCAAGATCGAAATTGAGGTCTGAGGCATCTTTGAATTGCTTGGTTTGGTTTCTGAATGGGAACGACCTTTCAGCAAGGCAAAGTGCAGCCATGGTGCTCAAGGAAATGCCTGTGAGAGCTCTAGCTAAAACTGAAGGCTTAATTGAAGCTTTGGTGAAGATGATTAAAGAGCCTATAGGACCTAATGCAACCAAAGCAAGCTTGACCAAGATTTTCCAGTTGGTTTCCTCATCAGATGACAAAGAGAGAATCTCAAAGAGATTTGTGGAACTGGGTTTGGTTTCTTTGTTGCTGGAGGCCATTGTTGATGCAGACAAAAGTATATGTGAGAAGGCTTTGGGTGTGTTGGATTGCATCTGTGATTGTAAAGAAGGAAAGGAAGTGGCCGTGGCTAATGCTCTAACCTTGCCTCTTGCAATTAAGAAGATCCTAAGGGTATCAGCGTTGGCCACTGAGTTTTCAGTTTCCATTCTTTGGAAGCTCTGTGACAAGGAAGATGAAGAGGGTCTAGTTGAAACAGTTCAACTTGGAGGTTTTCAGAAGCTCCTGGTTTTGTTGCAGGTGGGTTGTGAAGAAAGCATGAAGGAGAAGCTCACTGAATTGTTGAAACTGTTGAATGCTTATAGAAGCAGAGCGGAATGTGTTGATTCATCCTTGAATTTCAAGTACCTCAAGAAGCCCTTCTAA 1305 0.4667 MVLSGTLRKVFRRAHKEKIRRGGELDLEPVIPTHFRCPVSLELMKDPVTLCTGITYDRDSIDRWIESGNNTCPVTNQVLSSTHMIPNHAIRRMIQDWCVENQSYGIERIPTPRIPVAPYEVSETCSRIVAAARNGDVKKCQELVGKIKNWGKESERNKRCIVENGACAVLASAFDSFSRGTIEENKVVLEEILGLLPAMMNPSQEDARSKLRSEASLNCLVWFLNGNDLSARQSAAMVLKEMPVRALAKTEGLIEALVKMIKEPIGPNATKASLTKIFQLVSSSDDKERISKRFVELGLVSLLLEAIVDADKSICEKALGVLDCICDCKEGKEVAVANALTLPLAIKKILRVSALATEFSVSILWKLCDKEDEEGLVETVQLGGFQKLLVLLQVGCEESMKEKLTELLKLLNAYRSRAECVDSSLNFKYLKKPF 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1325 434 Gene3D - 122 264 IPR011989 -
Lele25g1325 434 PANTHER WDSAM1 PROTEIN 28 421 IPR045185 GO:0061630
Lele25g1325 434 CDD RING-Ubox_PUB 35 77 IPR045210 -
Lele25g1325 434 Gene3D - 266 423 IPR011989 -
Lele25g1325 434 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 31 104 IPR013083 -
Lele25g1325 434 ProSiteProfiles U-box domain profile. 30 104 IPR003613 GO:0004842|GO:0016567
Lele25g1325 434 FunFam RING-type E3 ubiquitin transferase 31 102 - -
Lele25g1325 434 SUPERFAMILY ARM repeat 127 410 IPR016024 -
Lele25g1325 434 SUPERFAMILY RING/U-box 29 107 - -
Lele25g1325 434 SMART Ubox_2 34 97 IPR003613 GO:0004842|GO:0016567
Lele25g1325 434 Pfam U-box domain 31 102 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1325 Lele-ChrLele25 9048536 9049840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g1325 23 434 U-box Gene Family AT5G37490 47.733 3.81e-121 358