Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1323 ATGACCAGGAGGAAGGTGAAGCTCGCGTTCATTCTCAATGAATCCGCGAGAAAGACGACCTACAGGAAGAGGAAGAATGGCATGGTGAAGAAGGCAACTGAACTTTCCACCCTCTGTGGGGTTGAAGCATGCATGATAATTTACAGTCCTTATGATTCTGAGCCTGAGATTTGGCCTTCCTCCATGGGAGTCCAAGGCACAATTGTGAGGTTCAGACAACTGCCGGAGATGGAGCAGGTCAAGAAGATGATGAACCAAATGAGCTTCACGAGGGAACGGATCCAGAAAATCAGCGAGCAGTTGAAGAAGATGAGGAAGATCAATAGGGAGAAGGAGCTGACCCTGATCATGTATCACTACATGAGCACTGGGAATTTTCTGCAGAATATGACTGTCAATGATCTCCATGATATGTCATGGCTGATTGAGCATAACCTGAGGGATATCTGCAGGAGGATGGGGGCACTGCAGATTGAGCCTCAGGATGAAGTCCAAATCCAAGCTCAGGGACAAGAACAAGCAGGAGGAGAAGATCATAACAATGGCAAGGGAGTTATGGAGATGAACATAGGCACATTGCAGAAACAGCAAAATTTTATGGAACTGATGAACACTGCTGGGGATGATACAGTTCCACCATTTGGAGATGCCAATCTCTATAATACTTGGCCTAGCCCCTTTTACTTTTGA 690 0.4623 MTRRKVKLAFILNESARKTTYRKRKNGMVKKATELSTLCGVEACMIIYSPYDSEPEIWPSSMGVQGTIVRFRQLPEMEQVKKMMNQMSFTRERIQKISEQLKKMRKINREKELTLIMYHYMSTGNFLQNMTVNDLHDMSWLIEHNLRDICRRMGALQIEPQDEVQIQAQGQEQAGGEDHNNGKGVMEMNIGTLQKQQNFMELMNTAGDDTVPPFGDANLYNTWPSPFYF 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1323 229 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lele25g1323 229 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 171 - -
Lele25g1323 229 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lele25g1323 229 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele25g1323 229 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele25g1323 229 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Lele25g1323 229 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Lele25g1323 229 Gene3D - 13 120 IPR036879 GO:0003677|GO:0046983
Lele25g1323 229 Coils Coil 80 114 - -
Lele25g1323 229 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Lele25g1323 229 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Lele25g1323 229 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1323 Lele-ChrLele25 9043472 9044161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g1323 1 157 Type I MADS-box Gene Family AT5G48670 49.682 2.19e-46 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lele25g1323 SRF-TF 2.6e-18 No_clan