Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1315 ATGATCACCAGAATTCAGAAATTCTTGAAAAGTTATAATCATTGGTCTCAATCTTTCTATCTATTGTGCTCATCGTCTTCTTACAGCTCCCTTTCGTCCAATTCCTGGTATACTCCACGACGTCTCCGTAAAGACGACGATGACATTTTCTCAACCATCTCTGAAGCTATCGACAATTCCCAGACAGAGCCTCTGGATTCGTCTCTTCAAAGGATTCTCCCTTCACTCAGAGCCCACCATGTCATCAATCTCATTAACTTCAACCCTCATTCTCTTTCCCCTTCTTCTCTCTTCTCCTTCTTCAGTTGGCTCGCTTCTCGTCCCCCATTTCGCCACACTGTTCAATCCTACTGCACTATGGCTCACTTCCTCTGCACTCACCGGATGCTCCCTGAAGCTCTATCCCTCGTGCGATTCATAGTGTCTTGGAAAGGCAAGGACTCGGCTTCTTTATTGTTTGCGTCTGTTCTTCAAACTAGATGTACCCACCAATCCAATGTTGTATTTGATGTTTTAATTCATGCTTATTTGGATTCTGGATTTGTTGCGGATGCCATTCAATGTTTTCGGTTGGCTAGGACAAATAATCTTGAAGTCCCACTTCGTTCTTGTGGTGATCTGCTTGATAAGGCGATGAAGTTGAAATCAGCCGAATCTGCCTGGGCATTCTTTTTGGAAATTTTGGATTCTGGGTATCCTCCAAAAGCTTATAACTTCAATGTCTTGATGCATAGGTTTTGTAAGGAAGGTAATATTAGAGGTGCCCAGTTGGTGTTTGATGAAATGGGAAAGAGACGTTTGCGTCCTACGGTTGTTAGCTTTAACACTTTGATCAATGGATATTGTAAATCGGGAAACCTAAGCGAGGGATTTAGGTTGAAGAGGGTTATGGAAAATGAAAAGATTTTTCCAGATGTTTTCACTTTCAGTTCTTTGATCAATGGATTGTGTAAAGAGTGCAGGTTAGATGAGGCAAACAAGCTGTTTGTTGAAATGCTCAAGAGAGGTTTGGTTCCAAATTATGTTACTTTCACCACTTTAATTGATGGGCAATGCAAATATGGGAAAGTTGATTCGGCCATGAAAAATTTTCAGCTAATGCTAGCTAAGGGCATCAAACCTGACTTAGTCACATACAATGCACTGATCAATGGCCTTTGCAGGGTTGGAGATTTGAAAGAGGCTAGGAAGCTTCTGGAAGAGATGAGTGCAACTGGATTGAAGCCTGACAAGATTACTTTCACCACGCTGATAGACGGATTTTATAAGGATGGAGATCTTGAACTGGCCTTGGAGATCAAGCAGAGAATGATTGAAGAAAGGATCAAACTTGATGACGTGGCTTTCACCGCGCTTATTTCTGGACTCTGTAAAGATGGAAGAGTTCATGATGCAGAAAAAATGTTGAGGGAGATGATGAATTCTGGTTTCAAACCCGATGATGGCACATTCACTATGGTTATTGATGGTTTTTGTAAGAAGGGTGACACTAAGATGGGATTTAAGCTACTCAAGGAAATGCAAAGGGATGAACATGTTCCAGGAGTTGTGACATATAATGTGCTTATGAATGGACTATGCAAGAAAGGTCAAATGAAAAATGCTAAAATGATGTTAGACGCAATGCTTAATTTGGGGGTAGTTCCAGATGATATTACATTTAACATTTTGCTAGAAGGTCATTGCAAGCATGGTAGTCCTGAAGAAATTGAGCTATTTAGAAGTGAGAAAGGACTTATTACAGATTATGCTTCTTATACTGCACTTCTTAGGGAAGCGAGTAAAGTATCCAAAGATCGCCCAAAGAGATGA 1812 0.4084 MITRIQKFLKSYNHWSQSFYLLCSSSSYSSLSSNSWYTPRRLRKDDDDIFSTISEAIDNSQTEPLDSSLQRILPSLRAHHVINLINFNPHSLSPSSLFSFFSWLASRPPFRHTVQSYCTMAHFLCTHRMLPEALSLVRFIVSWKGKDSASLLFASVLQTRCTHQSNVVFDVLIHAYLDSGFVADAIQCFRLARTNNLEVPLRSCGDLLDKAMKLKSAESAWAFFLEILDSGYPPKAYNFNVLMHRFCKEGNIRGAQLVFDEMGKRRLRPTVVSFNTLINGYCKSGNLSEGFRLKRVMENEKIFPDVFTFSSLINGLCKECRLDEANKLFVEMLKRGLVPNYVTFTTLIDGQCKYGKVDSAMKNFQLMLAKGIKPDLVTYNALINGLCRVGDLKEARKLLEEMSATGLKPDKITFTTLIDGFYKDGDLELALEIKQRMIEERIKLDDVAFTALISGLCKDGRVHDAEKMLREMMNSGFKPDDGTFTMVIDGFCKKGDTKMGFKLLKEMQRDEHVPGVVTYNVLMNGLCKKGQMKNAKMMLDAMLNLGVVPDDITFNILLEGHCKHGSPEEIELFRSEKGLITDYASYTALLREASKVSKDRPKR 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1315 603 Pfam PPR repeat family 269 318 IPR002885 -
Lele25g1315 603 Pfam PPR repeat family 374 423 IPR002885 -
Lele25g1315 603 Pfam PPR repeat family 514 563 IPR002885 -
Lele25g1315 603 Pfam PPR repeat family 445 493 IPR002885 -
Lele25g1315 603 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 410 444 IPR002885 -
Lele25g1315 603 Pfam PPR repeat 335 367 IPR002885 -
Lele25g1315 603 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 480 514 IPR002885 -
Lele25g1315 603 PANTHER ATPASE EXPRESSION PROTEIN 3 22 598 - -
Lele25g1315 603 TIGRFAM PPR: pentatricopeptide repeat domain 412 445 IPR002885 -
Lele25g1315 603 TIGRFAM PPR: pentatricopeptide repeat domain 377 410 IPR002885 -
Lele25g1315 603 TIGRFAM PPR: pentatricopeptide repeat domain 307 340 IPR002885 -
Lele25g1315 603 TIGRFAM PPR: pentatricopeptide repeat domain 342 375 IPR002885 -
Lele25g1315 603 TIGRFAM PPR: pentatricopeptide repeat domain 517 550 IPR002885 -
Lele25g1315 603 TIGRFAM PPR: pentatricopeptide repeat domain 239 270 IPR002885 -
Lele25g1315 603 TIGRFAM PPR: pentatricopeptide repeat domain 483 515 IPR002885 -
Lele25g1315 603 TIGRFAM PPR: pentatricopeptide repeat domain 272 306 IPR002885 -
Lele25g1315 603 TIGRFAM PPR: pentatricopeptide repeat domain 447 480 IPR002885 -
Lele25g1315 603 Gene3D Tetratricopeptide repeat domain 370 460 IPR011990 GO:0005515
Lele25g1315 603 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 235 269 IPR002885 -
Lele25g1315 603 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 270 304 IPR002885 -
Lele25g1315 603 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 340 374 IPR002885 -
Lele25g1315 603 FunFam Pentatricopeptide repeat-containing protein At5g39710 323 429 - -
Lele25g1315 603 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 515 549 IPR002885 -
Lele25g1315 603 Gene3D Tetratricopeptide repeat domain 462 600 IPR011990 GO:0005515
Lele25g1315 603 Gene3D Tetratricopeptide repeat domain 249 366 IPR011990 GO:0005515
Lele25g1315 603 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 445 479 IPR002885 -
Lele25g1315 603 Pfam PPR repeat 239 266 IPR002885 -
Lele25g1315 603 Gene3D Tetratricopeptide repeat domain 52 229 IPR011990 GO:0005515
Lele25g1315 603 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 305 339 IPR002885 -
Lele25g1315 603 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 375 409 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1315 Lele-ChrLele25 8973583 8975394 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g1315 9 592 Glycosyltransferase AT1G05670 31.438 1.61e-94 304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1315 25 8973583 8975394 Lele25g1328 25 9083100 9083915 CCT
Lele25g1315 25 8973583 8975394 Lele26g1339 26 9056498 9057319 CCT
Lele25g1315 25 8973583 8975394 Lele27g0758 27 15694670 15696170 CCT
Lele25g1315 25 8973583 8975394 Lele27g0773 27 15803683 15805494 hybridization
Lele25g1315 25 8973583 8975394 Lele28g1314 28 8902227 8903609 hybridization