Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1311 ATGCCTTCTCTCTCACTACTGATATTTCTCTTCCTCGCCACCACCGTCTCTCGCACTTGTTCCCACTCTCACTCATCCTCCATAGACTCCTTCATCTTCGCCGGCTGCACCCAGCAGAAGTACTCACCGGATTCTCCTTATCCCGCCAACCTCCAAGCCCTACTCACCTCCCTCCTCAGCTCCTCCACCTACTCTTCTTACTCCAACTTCACCGTTCTCGGTTCCTCCGTCGTCTACGGCCTCTACCAGTGCCGTGCCGACCTCTCCATGCCCGACTGCTCCTCCTGCATCTCCCGCTCCCTCAACCGCCTCTCCTCCCTCTGCCCCTCCACCTGCGGAGCCGCTGTCCAGCTCGACGGTTGCTTCGTCAAGTACGATAACGCCACCTTCGTCGGTGTCGAGGACAAGACCGTCGTTTTCAAGAAATGCGGACCTTCCGTGGGAAGTAGTAGCAGCGGCAAGGATATGGGAAGCACGGAAGCGGTGCTGTCTGCGTTGTCGGGTTCCGGCGGATATTTCAGGGTGGTCGGGTCGGGTAATGTGCAGGGTGTGGCTCAGTGCACCGGCGATCTTGCGTTCGATCAGTGCCAGGACTGTGTGTCGGAGGCAATCCGACGGCTCAGAAGCGAGTGCGGAAGTGCCGATTACGGGGACGTATTCTTGGGCAAGTGCTATGCGAGATACTCAGTTGGTGGGGCCCACGCTTATGAACCCAAGGCCCACGGGAAATCAAAGAATGGAGGAGAAAAGACGTTTGTGGTAATAATTGGATTATTAGCAGGAATAGCTGTCCTCGTGATCTTCCTTGCTTTCTTAAAGAGCATTTGTGCTAGAGGACATGGTAATTCTTACCAAACATATAAAACTTAG 870 0.5494 MPSLSLLIFLFLATTVSRTCSHSHSSSIDSFIFAGCTQQKYSPDSPYPANLQALLTSLLSSSTYSSYSNFTVLGSSVVYGLYQCRADLSMPDCSSCISRSLNRLSSLCPSTCGAAVQLDGCFVKYDNATFVGVEDKTVVFKKCGPSVGSSSSGKDMGSTEAVLSALSGSGGYFRVVGSGNVQGVAQCTGDLAFDQCQDCVSEAIRRLRSECGSADYGDVFLGKCYARYSVGGAHAYEPKAHGKSKNGGEKTFVVIIGLLAGIAVLVIFLAFLKSICARGHGNSYQTYKT 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1311 289 ProSiteProfiles Gnk2-homologous domain profile. 134 233 IPR002902 -
Lele25g1311 289 Pfam Salt stress response/antifungal 173 229 IPR002902 -
Lele25g1311 289 Pfam Salt stress response/antifungal 36 127 IPR002902 -
Lele25g1311 289 Gene3D - 148 231 IPR038408 -
Lele25g1311 289 Gene3D - 28 130 IPR038408 -
Lele25g1311 289 PANTHER ANTIFUNGAL PROTEIN GINKBILOBIN-2-LIKE 3 276 - -
Lele25g1311 289 FunFam cysteine-rich repeat secretory protein 3 28 130 - -
Lele25g1311 289 ProSiteProfiles Gnk2-homologous domain profile. 29 130 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1311 Lele-ChrLele25 8909451 8910838 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g1311 38 270 Receptor kinase-like Gene Family AT5G40380 28.085 8.21e-17 78.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1311 25 8909451 8910838 Lele25g1311 25 8909451 8910838 CCT
Lele25g1311 25 8909451 8910838 Lele26g1315 26 8864253 8865491 CCT
Lele25g1311 25 8909451 8910838 Lele28g1308 28 8838040 8838624 CCT
Lele25g1300 25 8797088 8797772 Lele25g1311 25 8909451 8910838 CCT
Lele25g1311 25 8909451 8910838 Lele28g1308 28 8838040 8838624 hybridization