Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1300 ATGGCGACAGAACCTCCTTCGCTTCCTTCTTACCCAGAGATGATAATGAAGGCTCTGGAGGCTCTAAACGAACCCACTGGTTCGAACAAATCGTCAATCGCGAAGCACATAGAGGCTACCTACGGCGAGTTACCGGCGAGTAACCTGACGTTGCTTTCTCACCATCTGAACAGGATGAAGGAGAGTGGGGAGCTTGTGTTCGCGAAGAACAATTACATGAAACCCGACCCGAATGCCCCACCCAAGCGAGGTCGGGGCAGGCCACCCAAGGCCAAGGTTCCTCTTCCTCCGGGAACCGTCCTTTCCCCACCCAGGCCCAGAGGCCGCCCACCCAAGGACCCAAACACTCCTCCCAAGCCCAAAACCTCAACTGGCAGTGGCAGGCCAAGAGGAAGGCCCAAGAAGGTGGCCCGGACTTTACCGGAGAGTGGGGCAGTTGTGAGTAGGGGAAGAGGCCGGCCTCCGAAGGAAAAGCCCGCCGCACTGACTGAAGTGAGCGTTGAACAATAG 510 0.5745 MATEPPSLPSYPEMIMKALEALNEPTGSNKSSIAKHIEATYGELPASNLTLLSHHLNRMKESGELVFAKNNYMKPDPNAPPKRGRGRPPKAKVPLPPGTVLSPPRPRGRPPKDPNTPPKPKTSTGSGRPRGRPKKVARTLPESGAVVSRGRGRPPKEKPAALTEVSVEQ 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1300 169 Pfam linker histone H1 and H5 family 9 69 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele25g1300 169 FunFam HMG-Y-related protein A 3 85 - -
Lele25g1300 169 MobiDBLite consensus disorder prediction 67 169 - -
Lele25g1300 169 PRINTS AT-hook-like domain signature 82 92 IPR017956 GO:0003677
Lele25g1300 169 PRINTS AT-hook-like domain signature 125 135 IPR017956 GO:0003677
Lele25g1300 169 PRINTS AT-hook-like domain signature 102 113 IPR017956 GO:0003677
Lele25g1300 169 SMART h15plus2 5 71 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele25g1300 169 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 7 76 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele25g1300 169 SUPERFAMILY "Winged helix" DNA-binding domain 4 83 IPR036390 -
Lele25g1300 169 Gene3D - 3 91 IPR036388 -
Lele25g1300 169 SMART AT_hook_2 82 94 IPR017956 GO:0003677
Lele25g1300 169 SMART AT_hook_2 127 139 IPR017956 GO:0003677
Lele25g1300 169 SMART AT_hook_2 148 160 IPR017956 GO:0003677
Lele25g1300 169 SMART AT_hook_2 104 116 IPR017956 GO:0003677
Lele25g1300 169 MobiDBLite consensus disorder prediction 90 118 - -
Lele25g1300 169 Pfam AT hook motif 82 93 IPR017956 GO:0003677
Lele25g1300 169 Pfam AT hook motif 127 137 IPR017956 GO:0003677
Lele25g1300 169 Pfam AT hook motif 104 115 IPR017956 GO:0003677
Lele25g1300 169 Pfam AT hook motif 149 159 IPR017956 GO:0003677
Lele25g1300 169 PANTHER HISTONE H1 7 160 - -
Lele25g1300 169 PRINTS High mobility group protein (HMGY) signature 106 117 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Lele25g1300 169 PRINTS High mobility group protein (HMGY) signature 80 92 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Lele25g1300 169 PRINTS High mobility group protein (HMGY) signature 95 106 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1300 Lele-ChrLele25 8797088 8797772 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g1306 26 8772907 8775752 Lele25g1300 25 8797088 8797772 CCT
Lele27g0786 27 15969544 15972613 Lele25g1300 25 8797088 8797772 CCT
Lele28g1298 28 8736992 8739835 Lele25g1300 25 8797088 8797772 CCT
Lele25g1300 25 8797088 8797772 Lele25g1300 25 8797088 8797772 CCT
Lele25g1300 25 8797088 8797772 Lele26g1305 26 8763291 8772876 CCT
Lele25g1300 25 8797088 8797772 Lele27g0789 27 15984430 15985114 CCT
Lele25g1300 25 8797088 8797772 Lele28g1295 28 8722835 8723517 CCT
Lele25g1269 25 8557567 8560869 Lele25g1300 25 8797088 8797772 CCT
Lele25g1300 25 8797088 8797772 Lele25g1311 25 8909451 8910838 CCT
Lele25g1300 25 8797088 8797772 Lele26g1315 26 8864253 8865491 CCT
Lele25g1300 25 8797088 8797772 Lele28g1308 28 8838040 8838624 CCT
Lele25g1300 25 8797088 8797772 Lele25g1300 25 8797088 8797772 ECH
Lele25g1300 25 8797088 8797772 Lele27g0789 27 15984430 15985114 hybridization
Lele25g1300 25 8797088 8797772 Lele28g1295 28 8722835 8723517 hybridization