Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1288 ATGTCCTCCGTCAGAATCCAACCCACTTCATGTGTTCTCTCCTCCACCATCAACCAACACCTCCGCTTACGCCCCCACCACCCCTCCCTTTCTTCCATCTGTTTCACCCATTCCGCGATTCGTGGCCGTGGCACTCTCCGGATGACCCTTAGGGTTTCTATGTCTTCTGCCCCTTCTTCGTCCAGCCCCCTTCAGATTTGCGTCAAAGATTCTATTACCACTCCCGGCAAGCTTGGCGACTGCCCCTTTTGCCAGAGAGTATTGCTGACAATGGAGGAAAAGCATCTACCTTATGACATGAAGTTGGTGGATCTGAAACACAAGCCTGAATGGTTCTTAAAAATCAACCCAGAGGGTAAAGTTCCTGCGGTAAACCTTGATGAGAAGTGGGTTGCTGATTCAGATGTTATCACACAAGCATTGGAAGAGAAGTTTCCTAGCCCACCATTGGGAACCCCACCTGAAAAGGCATCAGTTGGCTCAAAGATCTTTTCTACATTCATTGGGTTTCTCAAGAGCAAAGATCCAAATGATGGGACAGAGCAAGCCTTATTAAGTGAACTAGGCTCCTTGAATGATTACCTCAAGGAAAACGGTCCTTTTATCAATGGGAAAGACATATCTGCGGTAGACTTATCCCTTGGACCAAAGCTATACCACATGGAGATTGCTTTGGGACATTATAAGAAATGGACGGTTCCTGATTCACTCCCCTATGTGAAGTCTTATATGAAGGCTATTTTCTCAAGGGATTCATTCATCAAAACAAGTGCACATCCGCAGGATGTTGTTCAAGGATGGCGTCCAAAAGTTGAGGGGTGA 822 0.4659 MSSVRIQPTSCVLSSTINQHLRLRPHHPSLSSICFTHSAIRGRGTLRMTLRVSMSSAPSSSSPLQICVKDSITTPGKLGDCPFCQRVLLTMEEKHLPYDMKLVDLKHKPEWFLKINPEGKVPAVNLDEKWVADSDVITQALEEKFPSPPLGTPPEKASVGSKIFSTFIGFLKSKDPNDGTEQALLSELGSLNDYLKENGPFINGKDISAVDLSLGPKLYHMEIALGHYKKWTVPDSLPYVKSYMKAIFSRDSFIKTSAHPQDVVQGWRPKVEG 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1288 273 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 71 149 IPR004045 -
Lele25g1288 273 SUPERFAMILY GST C-terminal domain-like 144 270 IPR036282 -
Lele25g1288 273 SUPERFAMILY Thioredoxin-like 80 147 IPR036249 -
Lele25g1288 273 FunFam Glutathione S-transferase DHAR3 chloroplastic 62 150 - -
Lele25g1288 273 Pfam Glutathione S-transferase, N-terminal domain 80 149 IPR004045 -
Lele25g1288 273 Gene3D Glutaredoxin 63 150 - -
Lele25g1288 273 FunFam Glutathione S-transferase DHAR3, chloroplastic 151 273 - -
Lele25g1288 273 CDD GST_N_family 81 142 - -
Lele25g1288 273 SFLD Main (cytGST) 80 248 - -
Lele25g1288 273 PANTHER GLUTATHIONE S-TRANSFERASE DHAR2-RELATED 63 270 IPR044627 GO:0033355|GO:0045174|GO:0098869
Lele25g1288 273 CDD GST_C_DHAR 150 270 - -
Lele25g1288 273 SFLD Glutathione Transferase (cytosolic) 80 248 IPR040079 -
Lele25g1288 273 Gene3D - 151 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1288 Lele-ChrLele25 8706712 8710684 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g1288 47 273 Glutathione S-transferase Gene Family AT5G16710 74.009 3.29e-127 360
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1288 25 8706712 8710684 Lele25g1288 25 8706712 8710684 ECH
Lele25g1288 25 8706712 8710684 Lele27g0799 27 16054234 16058880 hybridization
Lele25g1288 25 8706712 8710684 Lele28g1287 28 8647154 8655466 hybridization