Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1284 ATGGCGGACGTCATGGTAATGAATGAAATTGAGGCATCAGCATTACGGATTGGAGTCGATCTTTCCACCATTGACCTGGACTCCATTCGTCTTCCGCCAGGCGATGATTTCGGCATCGTCAGTGATGCTGAAGATATCTACCAGGAGGAAAATCTGGAGTTGGATTCTGGATTTGGCAACATTATAGTTGTGGATAACCTCCCAGTTGTGCCCCGGGAGAAGTGTGAGAAGCATGAAGGTGTAATACGTAAAATTTTTAGTCAGATTGGTGTGATTAAAGACGATGGCCTATTTATGCCTGTTGATTCTGATTCTGAGAAAAGTTTGGGTTATTGCTTCATTGAGTACAATACTCCTCAGGAAGCTGAGCTTGTGAAAGAAAAGACACATGGATACAAGTTGGATCATGCACACGTTTTTTCAGTGAGCATGTTTGATGACTTTGACCGGTTTATGAAAGTTCCAGATCAGTGGGCTCCTCCTGAAACAAAGCCATATGCTCCAGGAGAAAATCTTCAGCATTGGCTTACTGATCCAAAAGCCCGAGACCAGTTTGTGATTCGTGCTGGTTCTGATACTGAGGTTTTATGGAATGATGCAAGGCATTTGAAGCCTGATCCTGTTTACAAGCGTACATTTTGGACTGAGAGTTTCGTGCAATGGTCCCCACTTGGTACATATTTGGCAACAGTTCACAGGCAGGGAGCAGCTGTTTGGGGAGGTGCTACAAACTTCAATCGTCTTATGCGATATGCTCATCCACAGGTAAAACTCATTGATTTTTCACCTGGTGAGAAGTATTTGGTAACTTATAGTAGCCATGAACCAAGCAATCCTTGTGATGCTAATAGGGTTGTGATAAATATATTTGATGTGAGGCTTGGTAAAGTGATGAGGAATTTCAAAGGAAGTGCAGACGATTTTGCAGTTGGAGGTACTGGGGGTGTTGCAGGGGTGTCATGGCCTGTTTTCAGCTGGTCTCCAACAGATCCTATTCTTGCACTTTTTGTTCCTGAGATGGGTGGTGGAAACCAACCTGCTAGGGTTAGTCTTGTTCAAATCCCTGGCAAAGAGGAACTCAGGCAGAAGAACTTTTTCAGTGTCAGTGATTGCAAGATGTACTGGCAAGGCAATGGGGACTATCTTGCTGTTAAGGTAGATCGGTATACGAAGGCCAAAAAAACCACGTACACAGGCTTTGAGCTTTTCCGTATAAAAGAACGTGATATACCCATTGAGCCTGATATTAGCTTTTACACCATGCGGACCGCTCAGAACACTGGCCGGGTTTCAAAGCTTGCTACTTTGAAAGGCAAGCAGGCAAATGCTCTTTTTTGGTCGCCTGCAGGTCGTTACATTGTGCTTGCAGGGTTGAAAGGATTCAATGGACAATTGGAATTTTATAATGTGGATGAGCTTGAAACTATGGCTACTGCTGAACATTTTATGGCAACAGATATTGAATGGGACCCAACAGGAAGGTATGTCGCAACTTCTGTGACTTCGGTCCATGAAATGGAAAATGGTTTCAACATATGGTCTTTCAATGGCAAACTTCTCTATCGTATCTTGAAGGATCACTTCTTTCAGTTCTTATGGCGGCCAAGACCACCAACTTTCTTGAGTCCAGAAAAGGAGGAAGAGATTGCAAGGAACTTGAAGAAGTATAGTAAGAAGTACGAGGCAGAAGACCAAGACGTGTCCCTGCTTCTGAGTGAGCAGGAACGCGAGAAGCGTAGACTGTTGAAGGAAGAGTGGGAAAAGTGGGTGAATCAATGGAAGCAGCTTCATGAAGAAGAAAAGTCAGTGAGGCAAAAGCTTAGAGATGGTGAGGCCAGTGATGAAGAAGAGGAATATGAGGCTAAGGACATTGAAGTTGAAGAGGTGGTGGATGTTTCAGAGGAGGTCCTTCCTTTTGAAGATGAACAACAGTGA 1935 0.4398 MADVMVMNEIEASALRIGVDLSTIDLDSIRLPPGDDFGIVSDAEDIYQEENLELDSGFGNIIVVDNLPVVPREKCEKHEGVIRKIFSQIGVIKDDGLFMPVDSDSEKSLGYCFIEYNTPQEAELVKEKTHGYKLDHAHVFSVSMFDDFDRFMKVPDQWAPPETKPYAPGENLQHWLTDPKARDQFVIRAGSDTEVLWNDARHLKPDPVYKRTFWTESFVQWSPLGTYLATVHRQGAAVWGGATNFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPCDANRVVINIFDVRLGKVMRNFKGSADDFAVGGTGGVAGVSWPVFSWSPTDPILALFVPEMGGGNQPARVSLVQIPGKEELRQKNFFSVSDCKMYWQGNGDYLAVKVDRYTKAKKTTYTGFELFRIKERDIPIEPDISFYTMRTAQNTGRVSKLATLKGKQANALFWSPAGRYIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDIEWDPTGRYVATSVTSVHEMENGFNIWSFNGKLLYRILKDHFFQFLWRPRPPTFLSPEKEEEIARNLKKYSKKYEAEDQDVSLLLSEQEREKRRLLKEEWEKWVNQWKQLHEEEKSVRQKLRDGEASDEEEEYEAKDIEVEEVVDVSEEVLPFEDEQQ 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1284 644 FunFam Eukaryotic translation initiation factor 3 subunit B 55 154 - -
Lele25g1284 644 Pfam Eukaryotic translation initiation factor eIF2A 415 531 IPR013979 -
Lele25g1284 644 Pfam Eukaryotic translation initiation factor eIF2A 363 412 IPR013979 -
Lele25g1284 644 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 39 327 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Lele25g1284 644 PIRSF Transl_init_eIF3b 6 330 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Lele25g1284 644 PIRSF Transl_init_eIF3b 322 414 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Lele25g1284 644 PIRSF Transl_init_eIF3b 413 638 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Lele25g1284 644 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 147 IPR000504 GO:0003723
Lele25g1284 644 Gene3D - 198 508 IPR015943 GO:0005515
Lele25g1284 644 Gene3D - 59 143 IPR012677 -
Lele25g1284 644 SMART rrm1_1 61 143 IPR000504 GO:0003723
Lele25g1284 644 CDD RRM_eIF3B 59 142 IPR034363 -
Lele25g1284 644 SUPERFAMILY DPP6 N-terminal domain-like 184 520 - -
Lele25g1284 644 SUPERFAMILY RNA-binding domain, RBD 58 146 IPR035979 GO:0003676
Lele25g1284 644 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 81 136 IPR000504 GO:0003723
Lele25g1284 644 MobiDBLite consensus disorder prediction 599 622 - -
Lele25g1284 644 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 49 638 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1284 Lele-ChrLele25 8663800 8668818 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g1284 5 637 Eukaryotic Initiation Factors Gene Family AT5G27640 66.996 0.0 993