Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1277 ATGGAGAAGAACACAGGTACTGTGTTGAGGAAAGGTAGCTGGACCCAAGAGGAAGACAATGTTCTCATAGCTTGCATTCACCAGTACGGTGAAGGAAAATGGCATCTTGTTCCTCAAAGAGCTGGTTTGAAGAGATGCAGGAAAAGCTGCAGAATGAGATGGTTGAATTATCTGAAACCCAACATCAACCGAGGAAGCTTCACCGACGACGAGGTTGATATGATTCGCAGGTTCCATAAACTTCTCGGCAACAGATGGTCGTTGATAGCTGGAAGGCTACCAGGAAGAACAGCGAATGCCGTGAAGAACTTCTGGCACACCAACATGCGCAATAGGAAGAAAGAAGAAAGCCACCACCAGAAGAAAGCAAAAGAGGTGATGATTAATAATAATGTAGAGGAGACGACGGCAGAAGTTGTAAAACAGCACGTAGTGATAAAACCTCTGCCTCACACTTTCGCTAAGAATTCGCCATGGCTGAGGAAGAATAATAAGCTTGTTTCTGCAAGTGACGTTGGTGATACTACTACTACTACTAATAATAATAATAATGCAGAAGCTAGAATTAGTTCCGGTGATATGATGAAAGGGGGTATTATTGCAGAGCCATGTGCTACTGATTTTTTGCAGAGAGATCATCATCAGTCAGATGAGTGGTGGGAGAGTTTGCTGAACAAGGAAGTAGAGGAAGGGCAAATTGGGAAGTTCACAGTGATGGAGTTTTGGGACTACGAAGACTTTCTGAAAGTGGAAGGTCCATTTTTGGAAGGCCAGAGTTCTTGGAGTCACTGTTCGTACAAGTTCTGA 807 0.4374 MEKNTGTVLRKGSWTQEEDNVLIACIHQYGEGKWHLVPQRAGLKRCRKSCRMRWLNYLKPNINRGSFTDDEVDMIRRFHKLLGNRWSLIAGRLPGRTANAVKNFWHTNMRNRKKEESHHQKKAKEVMINNNVEETTAEVVKQHVVIKPLPHTFAKNSPWLRKNNKLVSASDVGDTTTTTNNNNNAEARISSGDMMKGGIIAEPCATDFLQRDHHQSDEWWESLLNKEVEEGQIGKFTVMEFWDYEDFLKVEGPFLEGQSSWSHCSYKF 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1277 268 SMART sant 10 60 IPR001005 -
Lele25g1277 268 SMART sant 63 111 IPR001005 -
Lele25g1277 268 FunFam Myb transcription factor 11 63 - -
Lele25g1277 268 Pfam Myb-like DNA-binding domain 11 58 IPR001005 -
Lele25g1277 268 Pfam Myb-like DNA-binding domain 64 107 IPR001005 -
Lele25g1277 268 SUPERFAMILY Homeodomain-like 10 105 IPR009057 -
Lele25g1277 268 Gene3D - 66 137 - -
Lele25g1277 268 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 9 222 - -
Lele25g1277 268 ProSiteProfiles Myb-like domain profile. 6 58 IPR001005 -
Lele25g1277 268 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 113 IPR017930 -
Lele25g1277 268 CDD SANT 13 58 IPR001005 -
Lele25g1277 268 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
Lele25g1277 268 CDD SANT 66 109 IPR001005 -
Lele25g1277 268 MobiDBLite consensus disorder prediction 170 189 - -
Lele25g1277 268 Gene3D - 8 64 - -
Lele25g1277 268 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1277 Lele-ChrLele25 8609251 8610262 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g1277 9 228 MYB Transcription Factor Family AT1G66370 47.748 4.84e-60 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele25g1277 Myb_DNA-binding 4.6e-15 CL0123