Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1269 ATGGCTGCGCCGGAGCCCATGAATATGCAGAAGCCGAGCTTTACCCTCACAATGCCCCATCCAGCTCAGCCTTATTTTTCACTTTCTTTAGCCCAGCCTCAGCCCTCGGTTCCTGGTCCGTCTTCGTCTGCACCTGGACCTTCTACTCCTGCTCCAGCTCAGCTCGCTTCGTCGCAGCCTTCTGCCTCTTAAAGGATCTTTAATCCTATGAATTGTTTATCAATCTCTCCAGGTGTTCCAAAATTGATGCACAAAAATCGGTTACAAGAGTATGCTCAAAGGTCAAACTTACAGCTACCCATTTATCAAACTGTTATCGAAGGGCTTTCACATGCCCCGAAATTTAGGTCAACTGTGTGGGTTGATGGGAAGTGCTATACTTCCAATAATGTTTTTTCTGCACGAAAAGCGGCTGAACAAAATGTTGCTAAACTTGCGTATGAGCATATAACGGCAACAATCAAAGATGAAGGGATTCCCGATATTTTTGAGAAAACTATGTTTTTCAAGTCCATCTTAAATGAATTTGCTGCCAAGATGTATCTGGATAAAGTTACATACCACACTGTTCAGCAGGAAGGATGCCTTTCTTTTGTATCATCTTTGGTTTTCAATGGTAAATTCTACACTGGTGATCCAGCTAGAACCAAAAAGGAGGCTGAGCAACTGGCTGCACGAGCTGCTATTCTTTCAAACCTAAGTGATTCTAGGTCAGGAATGCGTCTTTATGAGGTAATCAAGTCAAAATTCAGATTTTGTGCTGCACTCAACAATGTGAAGGACTCACAACATACAAGTACTGTTTCGCCCATAGCTAGCTCAGGATATGTGTCTGTTAGTGCAGCTCATGTGACAGTTAATAATAATGAAAATAGTAACAAATTTGAGGTTGCACTTCCTGAGCCCTGTTCTAGAGGGCTTCCATTTCAACAATTGTTCCCGACGTCAGAACAAGAAAAATGCCCTGAAGATTCCAAACTTTCAAATCACCCACAGCATATTGATGATAGTTCAAGTTCAAAGAAGCGCAAAAGGAACAAGAAAAAGGCAGATGAGAAGTCCCAGATGGATTCTCTGCTGCCAGTCGCTGTATTTCCACTCAACCAAGCCCCTCCTCCTCCTTCTGTTGCATTGCCATTTCCTTCTGGCCAACCTAGTTGTGCATTGGCGCAGTAA 1176 0.4328 MAAPEPMNMQKPSFTLTMPHPAQPYFSLSLAQPQPSVPGPSSSAPGPSTPAPAQLASSQPSASXRIFNPMNCLSISPGVPKLMHKNRLQEYAQRSNLQLPIYQTVIEGLSHAPKFRSTVWVDGKCYTSNNVFSARKAAEQNVAKLAYEHITATIKDEGIPDIFEKTMFFKSILNEFAAKMYLDKVTYHTVQQEGCLSFVSSLVFNGKFYTGDPARTKKEAEQLAARAAILSNLSDSRSGMRLYEVIKSKFRFCAALNNVKDSQHTSTVSPIASSGYVSVSAAHVTVNNNENSNKFEVALPEPCSRGLPFQQLFPTSEQEKCPEDSKLSNHPQHIDDSSSSKKRKRNKKKADEKSQMDSLLPVAVFPLNQAPPPPSVALPFPSGQPSCALAQ 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1269 391 MobiDBLite consensus disorder prediction 319 341 - -
Lele25g1269 391 Pfam Double-stranded RNA binding motif 85 149 IPR014720 -
Lele25g1269 391 Pfam Double-stranded RNA binding motif 170 229 IPR014720 -
Lele25g1269 391 Gene3D - 81 150 - -
Lele25g1269 391 SUPERFAMILY dsRNA-binding domain-like 84 150 - -
Lele25g1269 391 MobiDBLite consensus disorder prediction 1 60 - -
Lele25g1269 391 MobiDBLite consensus disorder prediction 366 380 - -
Lele25g1269 391 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 168 229 IPR014720 -
Lele25g1269 391 SUPERFAMILY dsRNA-binding domain-like 163 229 - -
Lele25g1269 391 CDD DSRM_RNAse_III_family 169 229 - -
Lele25g1269 391 Gene3D - 162 231 - -
Lele25g1269 391 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 83 152 IPR014720 -
Lele25g1269 391 MobiDBLite consensus disorder prediction 10 37 - -
Lele25g1269 391 PANTHER RIBONUCLEASE III 33 309 IPR011907 GO:0003723|GO:0004525|GO:0006364
Lele25g1269 391 MobiDBLite consensus disorder prediction 308 391 - -
Lele25g1269 391 SMART DRBM_3 169 233 IPR014720 -
Lele25g1269 391 SMART DRBM_3 84 151 IPR014720 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1269 Lele-ChrLele25 8557567 8560869 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1269 25 8557567 8560869 Lele25g1269 25 8557567 8560869 CCT
Lele25g1269 25 8557567 8560869 Lele26g1282 26 8467930 8469817 CCT
Lele25g1269 25 8557567 8560869 Lele27g0814 27 16190551 16193916 CCT
Lele25g1269 25 8557567 8560869 Lele28g1274 28 8506813 8510096 CCT
Lele25g1269 25 8557567 8560869 Lele25g1300 25 8797088 8797772 CCT
Lele25g1269 25 8557567 8560869 Lele26g1305 26 8763291 8772876 CCT
Lele25g1269 25 8557567 8560869 Lele27g0789 27 15984430 15985114 CCT
Lele25g1269 25 8557567 8560869 Lele28g1295 28 8722835 8723517 CCT
Lele25g1269 25 8557567 8560869 Lele25g1269 25 8557567 8560869 ECH
Lele25g1269 25 8557567 8560869 Lele27g0814 27 16190551 16193916 hybridization
Lele25g1269 25 8557567 8560869 Lele28g1274 28 8506813 8510096 hybridization