Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1268 ATGGAGTTTGAGTACCAGAAGCCTGCAGTGCTTGAGGAAGAAGATGGGTTCAGCAACGATTCTGCCAAAACCCATTCTCCTTCTCCTTCTGCAAATGGGTTTGTTTATAAGCCCACAACAATCAATCCTATTCCTGAGGAAGCAAATTCTCTGATAAACTTCAAAGCCATTAATAATAATGGTGGTGAATCTTGGGTTAGCTTTAGGCAGAAAGATTACTGTTTGTGGGAAAATAATAATGGTTTACATCATCAGTGGAATCATCAGAATTCAGACCCAAGACTGATTCAGGATTTTAATTGCATTCAAGCTGCAAGTGGCTATGGAGGATCAAAAGAGAAGCATCAGCAGCAGCAAGGTGAGAGTTTGTATGGGTGGCTATATTCTGAGCCAAGTGTTCCTTCTGATAATAACAGGCTTCAAGATTCTTCACCAAGATCAGCAAAAGAAGCATCCTTCAACAATAAGCGCCTTTCAATGGGAGAGAGCATGCAAGCGTCGAAGAAGCAATGCACCGCTGCAAGTAAAAGTACACCAAAACCAACAAAGTCAAACCCATCTAAGGATCCTCAAAGTATAGCAGCCAAGAACAGAAGAGAGAGGATAAGCGAGCGACTCAAGATACTTCAAGAACTAGTTCCTAATGGCTCCAAGGTTGATTTGGTGACAATGTTGGAGAAAGCCATTAGTTATGTCAAGTTTCTTCAACTGCAAGTGAAGGTACTGGCAACTGATGAATTTTGGCCAGTGCAAGGAGGAAAAGCGCCTGATATTTCTCAAGTGAAAGAAGCCATTGATGTCATTCTTTCATCTCAGAGAGACAGAAACTCATCATCAACCTCAAAGCAACCGAAATGA 858 0.4161 MEFEYQKPAVLEEEDGFSNDSAKTHSPSPSANGFVYKPTTINPIPEEANSLINFKAINNNGGESWVSFRQKDYCLWENNNGLHHQWNHQNSDPRLIQDFNCIQAASGYGGSKEKHQQQQGESLYGWLYSEPSVPSDNNRLQDSSPRSAKEASFNNKRLSMGESMQASKKQCTAASKSTPKPTKSNPSKDPQSIAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKVLATDEFWPVQGGKAPDISQVKEAIDVILSSQRDRNSSSTSKQPK 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1268 285 FunFam Transcription factor bHLH83 184 243 - -
Lele25g1268 285 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 86 270 - -
Lele25g1268 285 CDD bHLH_AtIND_like 187 249 - -
Lele25g1268 285 MobiDBLite consensus disorder prediction 1 34 - -
Lele25g1268 285 Gene3D - 181 243 IPR036638 GO:0046983
Lele25g1268 285 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 185 244 IPR036638 GO:0046983
Lele25g1268 285 Pfam Helix-loop-helix DNA-binding domain 193 236 IPR011598 GO:0046983
Lele25g1268 285 MobiDBLite consensus disorder prediction 134 192 - -
Lele25g1268 285 MobiDBLite consensus disorder prediction 1 20 - -
Lele25g1268 285 SMART finulus 192 241 IPR011598 GO:0046983
Lele25g1268 285 MobiDBLite consensus disorder prediction 134 197 - -
Lele25g1268 285 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 186 235 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1268 Lele-ChrLele25 8553519 8554788 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g1268 126 277 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G66470 71.429 4.32e-64 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele25g1268 HLH 9e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g1282 26 8467930 8469817 Lele25g1268 25 8553519 8554788 CCT
Lele27g0814 27 16190551 16193916 Lele25g1268 25 8553519 8554788 CCT
Lele28g1274 28 8506813 8510096 Lele25g1268 25 8553519 8554788 CCT
Lele25g1268 25 8553519 8554788 Lele25g1268 25 8553519 8554788 CCT
Lele25g1268 25 8553519 8554788 Lele26g1281 26 8462443 8463664 CCT
Lele25g1268 25 8553519 8554788 Lele27g0815 27 16196886 16198146 CCT
Lele25g1268 25 8553519 8554788 Lele28g1273 28 8502357 8503565 CCT
Lele25g1268 25 8553519 8554788 Lele25g1268 25 8553519 8554788 ECH
Lele25g1268 25 8553519 8554788 Lele27g0815 27 16196886 16198146 hybridization
Lele25g1268 25 8553519 8554788 Lele28g1273 28 8502357 8503565 hybridization