Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1267 ATGGACATTTCTTCTCCCTCTTCCTCTCACTCCTCCTCCGGCGATCTCAGTCCTGACGCCAATCTCGATGCCGACACTCCCCGAAACCCCCTTGCCGTCAGGCGAGCCCTCCAGCTCCTCCAATCTGACGACCCCGATTTCAAGCTCCAAGCCGCTCGCGATATTCGCCGCCTCACCAAAACCTCCCAGCGTTGTCGTCGCCAGCTCTCTCAAGCTGTTGGTCCCCTCGTTTCCATGCTCCTACTCGACTCCTCCGAGTCACACGAGCCTGCTCTTCTCGCTTTGCTCAACCTTGCCGTCAAAGACGAAAAGAACAAAATCAGCATTGTGGAAGCTGGTGCTTTAGAACCAATAATTTCTTTCCTGAAGTCACAAAATATAAAACTGCAAGAGTGCGCCACCGCATCTTTGCTCACTTTATCCGCCTCTGCGACCAATAAACCAATCATTTGTGCTTCTGGAGCCATTCCTCTTCTTGTGGAGATCCTCGGAGATGGAAGCCCACAAGCTAAGGCTGATGCAGTAATGGCTCTTTCCAATTTATCCACCCACCCTGACAATCTCAGCGCCATTCTTGCAACAAATCCAATCCCTTTCATAGTCGATCTTCTCAAAACCTGTAAAAAATCGTCAAAAACAGCCGAGAAGTGCTGTGCTTTGATAGAATCCTTGGTGGGTTTTGACGAGGGAAGGACCGCCTTGACATCTGAAGAAGGCGCGGTTCTTGCAGTGGTGGAAGTTCTCGAAAATGGCAATCTCCAGAGCAGGGAGCATGCAGTTGGAGCCTTGTTTACAATGTGCGAAAGTGACCGATGTAAATACCGGGAACCGATTCTTAGAGAAGGCGTAATCCCAGGACTTCTTGAGCTTACCGTTCAGGGAACACCCAAGTCTCAGTTAAAAGCCCGTAACCTTCTGCAACTACTGAGAGAAACTCCATATCCCAGATCAGAAATTCAACCAGACACTCTTGAGAACATAGTTTGCAATATCATATCCCAGATTGATGGGGATGACCAGTCTGGTAAAGCAAAGAAGATGCTGGCTGAGATGGTCCAAGTCAGCATGGAACAGAGTCTGAGACATTTACAGCAAAGGGCTCTTGTGTTCACTCCCACAAGTGATCGGCCTACTATTACTAATTGTGCTTCTGAAGTATCTTCAAAATGA 1170 0.4872 MDISSPSSSHSSSGDLSPDANLDADTPRNPLAVRRALQLLQSDDPDFKLQAARDIRRLTKTSQRCRRQLSQAVGPLVSMLLLDSSESHEPALLALLNLAVKDEKNKISIVEAGALEPIISFLKSQNIKLQECATASLLTLSASATNKPIICASGAIPLLVEILGDGSPQAKADAVMALSNLSTHPDNLSAILATNPIPFIVDLLKTCKKSSKTAEKCCALIESLVGFDEGRTALTSEEGAVLAVVEVLENGNLQSREHAVGALFTMCESDRCKYREPILREGVIPGLLELTVQGTPKSQLKARNLLQLLRETPYPRSEIQPDTLENIVCNIISQIDGDDQSGKAKKMLAEMVQVSMEQSLRHLQQRALVFTPTSDRPTITNCASEVSSK 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1267 389 FunFam U-box domain-containing protein 4 19 369 - -
Lele25g1267 389 SUPERFAMILY ARM repeat 33 337 IPR016024 -
Lele25g1267 389 MobiDBLite consensus disorder prediction 1 19 - -
Lele25g1267 389 Pfam Armadillo/beta-catenin-like repeat 146 182 IPR000225 GO:0005515
Lele25g1267 389 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 154 196 IPR000225 GO:0005515
Lele25g1267 389 Gene3D - 152 365 IPR011989 -
Lele25g1267 389 Gene3D - 31 151 IPR011989 -
Lele25g1267 389 SMART arm_5 102 142 IPR000225 GO:0005515
Lele25g1267 389 SMART arm_5 184 226 IPR000225 GO:0005515
Lele25g1267 389 SMART arm_5 143 183 IPR000225 GO:0005515
Lele25g1267 389 SMART arm_5 227 268 IPR000225 GO:0005515
Lele25g1267 389 SMART arm_5 61 100 IPR000225 GO:0005515
Lele25g1267 389 PANTHER U BOX DOMAIN-CONTAINING 25 316 - -
Lele25g1267 389 MobiDBLite consensus disorder prediction 1 27 - -
Lele25g1267 389 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 113 155 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1267 Lele-ChrLele25 8538303 8541322 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g1267 33 310 U-box Gene Family AT2G23140 34.643 6.61e-41 151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g1281 26 8462443 8463664 Lele25g1267 25 8538303 8541322 CCT
Lele27g0815 27 16196886 16198146 Lele25g1267 25 8538303 8541322 CCT
Lele28g1273 28 8502357 8503565 Lele25g1267 25 8538303 8541322 CCT
Lele25g1267 25 8538303 8541322 Lele25g1267 25 8538303 8541322 CCT
Lele25g1267 25 8538303 8541322 Lele26g1280 26 8443352 8446329 CCT
Lele25g1267 25 8538303 8541322 Lele27g0816 27 16213426 16216468 CCT
Lele25g1267 25 8538303 8541322 Lele28g1272 28 8487867 8490878 CCT
Lele25g1267 25 8538303 8541322 Lele25g1267 25 8538303 8541322 ECH
Lele25g1267 25 8538303 8541322 Lele27g0816 27 16213426 16216468 hybridization
Lele25g1267 25 8538303 8541322 Lele28g1272 28 8487867 8490878 hybridization