Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1260 ATGGGTTGCTGCTTTAGTGCGAGAATCAAAGCTGAAAGCCCTCCACGAAAGGCTAGGAACTCAAGCCATGACCACAAAGAAGAGGATGGTTTGATGGGTTCAAGCAGCAAGTTCTCCACTTCCTCGGTTCCTCCAACTCCTCGAACGGAGGGTGAGATCTTGCAGTCCTCCAATTTGAAAAATTTCACATATAATGAGCTAAGAACAGCTACAAGGAACTTTCGTCCGGACAGTATGGTCGGCGAAGGTGGGTTTGGCGGCGTATTTAAGGGTTGGCTTGATGAGCAGACACTTGCACCGGCTAAACCGGGCACCGGGATAGTCATTGCTGTCAAGAAGCTTAACCAAGAAGGTTTCCAGGGACACAATGAATGGTTGACAGAGATCAATTTTTTGGGACAGTTGCATCATCCTAACCTTGTGAAATTGATTGGCTACTGCTTAGAGGATGAACACCGGCTTTTGGTATACGAGTTTTTGACCAAAGGCAGCTTGGATAATCATTTATTTCGAAGTGAGTTGTTAATTTTCCTTTCCATTACTGCCATTTCAAGGTTATATGTGGGGACATTTCATGTTGAACCACTTTCTTGGAGCAACCGAATGAAAATTGCCCTTGATGCTGCCAAAGGTCTTGCATTTCTTCATAGCGATGGAGTAAAAGTGATATATCGAGACCTAAAAGCTTCTAATATCTTGCTTGACTCAAACTTCAATGCAAAGTTATCTGATTTTGGACTGGCAAAGGACGGGCCATCTGGTGATAAGAGCCATGTCTCTACAAGGGTCATGGGCACATATGGCTATGCTGCTCCTGAGTATATGGCCACAGGTCACCTGACCAAGAAGAGTGATGTATACACTTTCGGGGTCGTTCTGCTCGAAATTATGTCAGGCAAACGTGCCTTGGACAAAAACAGGACAGCTAGGGAACAGAATTTAGTCGAATGGGCAAAGCCGTACATTTCAAGCAAGCGCAGGATTTTCCAAGTCATGGATGCTCGTATAGAAGGCCAGTACCTGGTACGTGAAGCCATGAAAGTAGCTAGAGTCGCTATCCAATGCCTGTCTGTTGAACCCCGGTTCAGACCGACCATGGCTGACGTGGTAAGAGCATTGGAACAGCTTCAGGATCCCAGTGATACAGGTAGCTCAACGGGTAGTAGCAATAGTAATGTTCCTAAACAGCATAAAAGAAGTTCGAATGAATCTTTGAATGGAGCTGGTTCTTCTGAGCCAAGATTATCTACTTCTTGTTCCACATAA 1266 0.451 MGCCFSARIKAESPPRKARNSSHDHKEEDGLMGSSSKFSTSSVPPTPRTEGEILQSSNLKNFTYNELRTATRNFRPDSMVGEGGFGGVFKGWLDEQTLAPAKPGTGIVIAVKKLNQEGFQGHNEWLTEINFLGQLHHPNLVKLIGYCLEDEHRLLVYEFLTKGSLDNHLFRSELLIFLSITAISRLYVGTFHVEPLSWSNRMKIALDAAKGLAFLHSDGVKVIYRDLKASNILLDSNFNAKLSDFGLAKDGPSGDKSHVSTRVMGTYGYAAPEYMATGHLTKKSDVYTFGVVLLEIMSGKRALDKNRTAREQNLVEWAKPYISSKRRIFQVMDARIEGQYLVREAMKVARVAIQCLSVEPRFRPTMADVVRALEQLQDPSDTGSSTGSSNSNVPKQHKRSSNESLNGAGSSEPRLSTSCST 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1260 421 FunFam Serine/threonine-protein kinase BIK1 41 159 - -
Lele25g1260 421 MobiDBLite consensus disorder prediction 33 52 - -
Lele25g1260 421 ProSitePatterns Serine/Threonine protein kinases active-site signature. 222 234 IPR008271 GO:0004672|GO:0006468
Lele25g1260 421 ProSitePatterns Protein kinases ATP-binding region signature. 80 113 IPR017441 GO:0005524
Lele25g1260 421 Pfam Protein tyrosine and serine/threonine kinase 78 373 IPR001245 GO:0004672|GO:0006468
Lele25g1260 421 PANTHER OS01G0588500 PROTEIN-RELATED 34 377 - -
Lele25g1260 421 ProSiteProfiles Protein kinase domain profile. 74 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele25g1260 421 SMART serkin_6 74 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele25g1260 421 MobiDBLite consensus disorder prediction 377 421 - -
Lele25g1260 421 Gene3D Phosphorylase Kinase; domain 1 49 159 - -
Lele25g1260 421 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 177 386 - -
Lele25g1260 421 MobiDBLite consensus disorder prediction 376 421 - -
Lele25g1260 421 Gene3D Transferase(Phosphotransferase) domain 1 162 400 - -
Lele25g1260 421 SUPERFAMILY Protein kinase-like (PK-like) 46 373 IPR011009 -
Lele25g1260 421 MobiDBLite consensus disorder prediction 1 52 - -
Lele25g1260 421 MobiDBLite consensus disorder prediction 12 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1260 Lele-ChrLele25 8449729 8453252 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g1260 1 405 Glycoside Hydrolase AT3G07070 41.067 6.73e-104 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lele25g1260 PK_Tyr_Ser-Thr 5.3e-47 CL0016