Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1259 ATGGGTTGCTGCTGCAGCGTGAGGGTCAAATCTGAAAACCCTTCACTCAAGGCTGTGAATTTAACTCATGATAGCAAAGAAGAGGATGGTTTGTTTGGTGGAAGCAAAAAGGTCTCCCAATTGAAAATTTTCACATATAACGAGCTTAAAAAAGCTACAAGGAACTTTCGTTCAAACAATAGAGTGGGCGAAGGTGGGTTTGGTAGTGTATTTAATGGGTGGTTTCATGAGCAGACACTTGCACCTGCTAAACCCTGCACAGGGATTGCCTTTGCTGTAAAGAAGCATGACCTAGATGGCTTCCAAGGGCAAAAGGAATGGCTGGCAGAGATCAATTTTCCGGCACAGCTGCATCATCCTAACATTGTGAAATTGATTGGCTACTGCTCAGAAGATGACCATCGGTTTTTGGTATACGAGTTTTTGACCAAAGGCAGCTTGGATATTCATTTATTTCGAAGGACATATCATGTCGAACCACTTTCTTGGAGCAACCGTATGAAAATTGCCCTTGATGTTGCCAAAGTTCTTGCATTTCTTCATAGTGATGAAGTAAATGTGATATATCGAGATTTAAACGCTTCTAATATCTTGATAGATGCAAACTTCAATGCAAAGCTATGTAATTTTGGTTTGGCAAAGGACGGACCATCAGGTGATGAGAGCCATGTCTCTACAAGGGTCATGGGCACATATGGCTATGCTGCTCCTGAGTATATAGCCACAGGTCACTTGTCCAAGAAGAGTGATGTCTACATGTTTGGGGTTGTTCTACTTGAAATTATGTCAGGCAAACGTGCATTGGATGTACAAAGGCCAGCCGGGGAACATAATTTAGTTGAATGGGCCAAGCCGTACCTTCCGAGCAAGCGTCGGATTTTCAAAGTTATGGATGCTCATATGGAAGGCCAGTACCTGGTACGTGAAGCCATGAAAGTGGCTAAAATCGCGATTCAATGCCTATCTGCAGAACCCCGGTTGAGACCAACCATGGCCGATGTGGTAAGAGCATTGGAAGAGCTTCAGGATTCCAGAGATAGAGGGCAAGGCAGGGCCAGGGTTTTCGATCCTTTCTTCGCTGAAGCTGGTAGGTTCACTGAAGATAGCGAGAAGCAATTCTGGGCTCTCAGTTTCGCGGACAGGGGTTGCGGATTTAGTGCGAGGATCAAATCCGAAAACCCTTCACGAAACGCTGTGAATTTAACCCATGATAGCATAGAAGATGATTGTTCGCTTGGTGGAAGCAACAAGGTCACCCAGTTGAAAATGTTCACATATAATGAGCTTAAAACAGCTACAAGGAACTTTCATCCGCACGATAAAGGGGGTGAAGGTGGGTTTGGTAGTGTATTTAAGGGGTGGCTTGATGAGCAGGCACTTGCACCTGCTAAACCAGGCACTAAAATTGCCATTGCTATGGAGCAGCTTAACCAATATGGCTCTCGAGGGCACCATGAATGGGCTCAATTTTCTGGACAGCTGCATCATCCTAACCTTGTTCTTGCATTTCGTCATGGTGATGAAGTAAATGTAGCATATCAAGATTTAAAAGCTGCTGATATCTTGCTTGATTCAGTGTGTGTGGTCTGTGGCCTGAGCAAGAAGGGTGATGTATACACTTTTGGGGTTGTTCTGCTTGAAATTATGTCAGGCAAACCTCGCTGTTGCAGAGTATTAGGCAATAAGATGCGGAGGCACAGTCCAGGATACTACAGTCCTCCTAGGAGAGGATATGGTGGTGGCGGGAGAAGCCCTCCTAGGAGGGGATATGGTGGAGGCAGACGCAGGGAACAAAATCACGGGAGCCTTTTGGTTCGGAACATTCCTCTCGATTGCCGACCTGAGGAACTTCGAGTTCCATTTGAGCGGTTTGGACCTGTCCGGGATGTCTACCTACCGAAGGACTATTACACTGGGTGA 1920 0.4568 MGCCCSVRVKSENPSLKAVNLTHDSKEEDGLFGGSKKVSQLKIFTYNELKKATRNFRSNNRVGEGGFGSVFNGWFHEQTLAPAKPCTGIAFAVKKHDLDGFQGQKEWLAEINFPAQLHHPNIVKLIGYCSEDDHRFLVYEFLTKGSLDIHLFRRTYHVEPLSWSNRMKIALDVAKVLAFLHSDEVNVIYRDLNASNILIDANFNAKLCNFGLAKDGPSGDESHVSTRVMGTYGYAAPEYIATGHLSKKSDVYMFGVVLLEIMSGKRALDVQRPAGEHNLVEWAKPYLPSKRRIFKVMDAHMEGQYLVREAMKVAKIAIQCLSAEPRLRPTMADVVRALEELQDSRDRGQGRARVFDPFFAEAGRFTEDSEKQFWALSFADRGCGFSARIKSENPSRNAVNLTHDSIEDDCSLGGSNKVTQLKMFTYNELKTATRNFHPHDKGGEGGFGSVFKGWLDEQALAPAKPGTKIAIAMEQLNQYGSRGHHEWAQFSGQLHHPNLVLAFRHGDEVNVAYQDLKAADILLDSVCVVCGLSKKGDVYTFGVVLLEIMSGKPRCCRVLGNKMRRHSPGYYSPPRRGYGGGGRSPPRRGYGGGRRREQNHGSLLVRNIPLDCRPEELRVPFERFGPVRDVYLPKDYYTG 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1259 639 PANTHER OS01G0588500 PROTEIN-RELATED 416 500 - -
Lele25g1259 639 FunFam Serine/threonine-protein kinase BIK1 23 141 - -
Lele25g1259 639 SUPERFAMILY RNA-binding domain, RBD 569 639 IPR035979 GO:0003676
Lele25g1259 639 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 142 351 - -
Lele25g1259 639 Gene3D - 577 639 IPR012677 -
Lele25g1259 639 Gene3D Phosphorylase Kinase; domain 1 40 141 - -
Lele25g1259 639 ProSiteProfiles Protein kinase domain profile. 56 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele25g1259 639 Gene3D Transferase(Phosphotransferase) domain 1 499 573 - -
Lele25g1259 639 MobiDBLite consensus disorder prediction 567 597 - -
Lele25g1259 639 ProSitePatterns Protein kinases ATP-binding region signature. 62 95 IPR017441 GO:0005524
Lele25g1259 639 Gene3D Phosphorylase Kinase; domain 1 414 498 - -
Lele25g1259 639 Gene3D Transferase(Phosphotransferase) domain 1 142 355 - -
Lele25g1259 639 SUPERFAMILY Protein kinase-like (PK-like) 38 338 IPR011009 -
Lele25g1259 639 SUPERFAMILY Protein kinase-like (PK-like) 418 556 IPR011009 -
Lele25g1259 639 Pfam Protein tyrosine and serine/threonine kinase 59 338 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1259 Lele-ChrLele25 8439254 8447677 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g1259 358 552 Glycoside Hydrolase AT3G07070 23.793 7.90e-08 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lele25g1259 PK_Tyr_Ser-Thr 6.8e-43 CL0016