Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1251 ATGCCTTTCATCTCGCAAATTCAACGTCAGTCTGATTACAATCTCTTCAGTTCCACCACTCCGATCGTCATTGACAATGGCGCATCATATTTTCGTATCGGATGGGCAGGAGAGACTGAACCCCGTGTTGCTTTCCGCAACATTGTGCAAAGGCCACGCCATAAAGTCACCGGTGAAACTGTTACTATTGTTGGTGATCATGATCCAGCATTAATGAAATACTTTGACTGCACTCGCTCTGGACCCCGCTCAGCATTTGATAGCAATGTTGTTTACCAGTTTGAAATAATGGAATACATTCTTGACTTTGGCTTTGACCGGATAGGTGCAAATCGATCAGAGATTGATCATCCTGTCCTGATTACAGAATGCGTGTGTAATCCAGTTCAATCTCGTAGTAAAATGGCAGAACTTCTTTTTGAGACTTATGGTGTTCCATCAATAGCCTTTGGGGTTGATGCAGCTTTCAGCTACAAGTATAATCAACACCATGGAGTTTGCAATAAAGATGGTCTTGCTATGTGTCCTGGATTTACCACAACCCATGTGATTCCGTTCGTAGATGGGGAACCTGCGTATAAAGGATGCTGCCGTACAAATATTGGTGGCTTCCATGTAACTGATTATTTAAAGCAACTTCTTTCGCTTAAATATCCCTACCATTTGGCTAGATTTACATGGGAAAAAGTTGAAGACCTGAAGATGGAACATAGTTACATTGCAAAGGATTATGCTTCTGAAGCTCGGTTGTTTCAGAGCGGAGGGAAGGAAGCTGAAGAGAAAACCAGATGTTGGCAGCTCCCTTGGGTTCCGCCACCAATTGAGGAGCCTCCTTCTGAGGAAGAGATTGCAAGAAAGGCAGCAATTAGAGAGAAACAAGGTCAAAGGTTGCGAGAAATGGCTGAGGCAAAGAGATCATCCAGAATAAATGAACTGGAAAATGAATTGCATGGCTTGGAGTTTCTCTTACAGCAGTTTGAGCAAGTAGCGGAGAGTGACATTCCATCCTTCCTATCAGACACTGGCTATGTCTCGAAGCAGGAGATAGAATCTGCCCGTGTCAAAGTTACACATTCTTTACGGAAAGCAAAAGGTGACCCAAAGAGTGAACAAGCTGAACCTGAAAAGGCTGACTCTGCTAATAATGAGAAGTATTCTCTTATAAACATCCCTGATGAAACACTAACCCCAGAACAGCTTATTGAAAAGAAGAAGCAGTTGTCACTCAAGTCCATGTCTGAAGGGCGGCAGCGATCAAAACAGAAACGCCATGAGGAGGAAATGCAACAGGAGAGGAGATTACAGCTAGAGGAGGAGAAACGCCTAGAGAACCCAGAGCTGTACCTGGAGCAATTACATGCTAAATACAAAGATCTATCAGAAAAAGTTGACCAACGAAAAAGACTCAAGACAAATGGAAACCACACAAATGGAAATAATTTGTCAGGTGGTGTTGGTCGTGGTGAGAGGCTAAATGCTGCTCATAGGGAAAGAATGCGCCTGTTGACAACTGCAGCGTTTGATCGTGGTAAAGGTGAGGATACATTTGGTGCCAGAGATGAAGATTGGCAACTTTACAAATTGATGAGTAAGGACAATGACGATGATGATGAGGGACCAGACGAGGATGAGACAGAATTGGCCCGCATCTCTTCAAGGCTCCAGGATTTGGATTCTACATTTGTACCCAAGTCAGAAACAGGTAACGCGCAGTCTGCTGAGGTGGTGCCACGTATTCGACCTCTCACCAAAGAGGACTTTCAGATTGTTCTTGGGGTTGAAAGATTCAGATGCCCTGAGATTTTGTTCAACCCAAACTGGATTGGGATTGATCAGGTAGGATTAGACGAGATGGCCGGGGTCTCGATAAGGAGGTTGCCAGACAAGAATGAAAGCTTGGAAGAGAGACTAACTGATTCGATACTCGTGACTGGTGGAAGCTCTCTTTTTCCTGGTATGATTGAACGACTTGAAGCTGGGATTAGGATGATTAGGCCCTGCGGATCTCCCATTAAAATAGTTAGAGCATTGGATCCAGTTTTGGATGCATGGAGAGGGGCTTCTGCTTATGCCTCAGCTTCACTGTTTCATACTCAAACTTTCAGTAGGTCGGATTATTATGAAAAGGGTGAAGATTGGCTTCGCAGTTATCAGCTTCAATATACATTGTAG 2172 0.4397 MPFISQIQRQSDYNLFSSTTPIVIDNGASYFRIGWAGETEPRVAFRNIVQRPRHKVTGETVTIVGDHDPALMKYFDCTRSGPRSAFDSNVVYQFEIMEYILDFGFDRIGANRSEIDHPVLITECVCNPVQSRSKMAELLFETYGVPSIAFGVDAAFSYKYNQHHGVCNKDGLAMCPGFTTTHVIPFVDGEPAYKGCCRTNIGGFHVTDYLKQLLSLKYPYHLARFTWEKVEDLKMEHSYIAKDYASEARLFQSGGKEAEEKTRCWQLPWVPPPIEEPPSEEEIARKAAIREKQGQRLREMAEAKRSSRINELENELHGLEFLLQQFEQVAESDIPSFLSDTGYVSKQEIESARVKVTHSLRKAKGDPKSEQAEPEKADSANNEKYSLINIPDETLTPEQLIEKKKQLSLKSMSEGRQRSKQKRHEEEMQQERRLQLEEEKRLENPELYLEQLHAKYKDLSEKVDQRKRLKTNGNHTNGNNLSGGVGRGERLNAAHRERMRLLTTAAFDRGKGEDTFGARDEDWQLYKLMSKDNDDDDEGPDEDETELARISSRLQDLDSTFVPKSETGNAQSAEVVPRIRPLTKEDFQIVLGVERFRCPEILFNPNWIGIDQVGLDEMAGVSIRRLPDKNESLEERLTDSILVTGGSSLFPGMIERLEAGIRMIRPCGSPIKIVRALDPVLDAWRGASAYASASLFHTQTFSRSDYYEKGEDWLRSYQLQYTL 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1251 723 FunFam Actin-related protein 5 18 170 - -
Lele25g1251 723 CDD NBD_sugar-kinase_HSP70_actin 22 202 - -
Lele25g1251 723 SUPERFAMILY Actin-like ATPase domain 170 716 IPR043129 -
Lele25g1251 723 Gene3D - 18 447 - -
Lele25g1251 723 Pfam Actin 19 269 IPR004000 -
Lele25g1251 723 Pfam Actin 588 715 IPR004000 -
Lele25g1251 723 MobiDBLite consensus disorder prediction 358 391 - -
Lele25g1251 723 Coils Coil 309 329 - -
Lele25g1251 723 FunFam Putative actin-related protein 5 683 711 - -
Lele25g1251 723 Coils Coil 449 469 - -
Lele25g1251 723 FunFam ARP5 actin-related protein 5 homolog 613 682 - -
Lele25g1251 723 FunFam Actin-related protein 5 203 257 - -
Lele25g1251 723 Gene3D Actin; Chain A, domain 4 203 272 - -
Lele25g1251 723 SUPERFAMILY Actin-like ATPase domain 18 159 IPR043129 -
Lele25g1251 723 MobiDBLite consensus disorder prediction 358 380 - -
Lele25g1251 723 PANTHER ACTIN 21 711 IPR004000 -
Lele25g1251 723 SMART actin_3 19 719 IPR004000 -
Lele25g1251 723 MobiDBLite consensus disorder prediction 404 437 - -
Lele25g1251 723 Gene3D - 589 678 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1251 Lele-ChrLele25 8355772 8361176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g1251 589 710 Cytoskeleton Gene Families AT3G12110 32.787 1.29e-16 80.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1251 25 8355772 8361176 Lele25g1251 25 8355772 8361176 CCT
Lele25g1251 25 8355772 8361176 Lele26g1263 26 8305379 8313664 CCT
Lele25g1251 25 8355772 8361176 Lele27g0832 27 16354282 16359775 CCT
Lele25g1251 25 8355772 8361176 Lele28g1255 28 8342269 8347783 CCT
Lele25g1251 25 8355772 8361176 Lele25g1251 25 8355772 8361176 ECH
Lele25g1251 25 8355772 8361176 Lele27g0832 27 16354282 16359775 hybridization
Lele25g1251 25 8355772 8361176 Lele28g1255 28 8342269 8347783 hybridization