Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1246 ATGGCACTTTATTTGGAAAAGGAAGTGCCCTTTCCTTTCAATGCAAGCTTATGTATGAATTCCATGTTGCAACTGAGGTGTCACATTCCCATATTATATTGTCCCGAACCAAGCGACGATCGAACGCGGCGTTGTGGTGGAAACGCAGTTTCTGGATCACTTGAGTCTGCTGGAACACGTAATCAAATTTTTTTAGTTAGTGGAGTCTCAATTCACTTTTCCCAAGCACATAGAGCCATGAGTTTTGTTTTGAGAGGAACAAGAGCAGACATAGAAACCGGATATCCTGGATTTATTCCTGAGAGGCATGCATTGCGTGTTCATGCAGCACGGCCTACTAATTCCAATTCACTTACTTTTCTTGTTACAGTTCTCCTGCTATTCATGATACTGAACTCTCACCAGATGTCACCAAATTTTCTGCTTTGGCTAGTGCTAGGTGTGTTCTTGATGGCTACAATGTTAAGGATGTATGCAACTTGTCAGCAGCTTCAAGCTGAGGCTCATGCCCATGCAGCAGCAGGCAGTGGTGGCCTTCTTGGGCACACTGAAGTACGGTTACATATGCCACCATCAATGGCAGTTACCACCCGAGGACGTCTACAAGGCCTTAGACTTCAGCTTGCACTTCTTGATAGGGAGTTTGATGATCTAGATTATGAAACTTTAAGAGCGCTGGATTCAGATAATGCTCCGCCGGCACCTTCTATGACTGATGAAGAGATAAATGCTCTTCCTGTTCACAAATACAAGGGTTCTGGTCTCCAGAACAGGAAATCCTCAATGCAGCAGACCTCATCTTCCACCTTTGCTGAGAAGAAGCAAGATACGTCAAATGCAGTGGGCGGTACAAAAGCCTCGGATGATGAGCTGACCTGCAGTGTATGTTTGGAGCAAGTTAACGTTGGGGATCTACTCCGTAGCTTGCCCTGCTTACATCAGTTTCATGCCAATTGCATTGACCCATGGCTGCGGCAACAAGGAACATGTCCGGTATGTAAATTCAGAGCAGGATCCACGTGGCATGAAAGTGACCAGAATGAAGTTGATGCTTCAGACATGGTTTGA 1068 0.4541 MALYLEKEVPFPFNASLCMNSMLQLRCHIPILYCPEPSDDRTRRCGGNAVSGSLESAGTRNQIFLVSGVSIHFSQAHRAMSFVLRGTRADIETGYPGFIPERHALRVHAARPTNSNSLTFLVTVLLLFMILNSHQMSPNFLLWLVLGVFLMATMLRMYATCQQLQAEAHAHAAAGSGGLLGHTEVRLHMPPSMAVTTRGRLQGLRLQLALLDREFDDLDYETLRALDSDNAPPAPSMTDEEINALPVHKYKGSGLQNRKSSMQQTSSSTFAEKKQDTSNAVGGTKASDDELTCSVCLEQVNVGDLLRSLPCLHQFHANCIDPWLRQQGTCPVCKFRAGSTWHESDQNEVDASDMV 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1246 355 MobiDBLite consensus disorder prediction 253 284 - -
Lele25g1246 355 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 229 338 IPR013083 -
Lele25g1246 355 Pfam Ring finger domain 292 334 IPR001841 -
Lele25g1246 355 ProSiteProfiles Zinc finger RING-type profile. 293 334 IPR001841 -
Lele25g1246 355 SUPERFAMILY RING/U-box 288 337 - -
Lele25g1246 355 PANTHER TARGET OF ERK KINASE MPK-1 81 339 - -
Lele25g1246 355 SMART ring_2 293 333 IPR001841 -
Lele25g1246 355 MobiDBLite consensus disorder prediction 254 284 - -
Lele25g1246 355 CDD RING-H2_PA-TM-RING 292 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1246 Lele-ChrLele25 8293914 8300503 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g1246 80 355 C3H Transcription Factor Family AT3G55530 72.924 3.12e-135 384
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1246 25 8293914 8300503 Lele26g1260 26 8249147 8252341 ECH
Lele25g1246 25 8293914 8300503 Lele25g1246 25 8293914 8300503 ECH
Lele25g1246 25 8293914 8300503 Lele27g0836 27 16416772 16419818 hybridization
Lele25g1246 25 8293914 8300503 Lele28g1252 28 8278525 8282229 hybridization