Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1245 ATGGCTACGGGGACATCTTATTGGTGTTACAGATGCAGTCGGTTCGTGAGGGTCCGGCGGCAGGACACGGTGGTGTGTCCCGACTGTGACAGTGGATTCGTGGAGGAGATTGAGCAAATTCCTCGGCCTGCTTCCATCGTGGATTCGAGCAGGCGGAGGTCCCCGGCGGCTTCGATGTACATGATTGGTAATCAGAACCCCAATTCTGGACAGACTCTGCGTCCTGCTCTGAGGAGGACTCGTCGGAGCAACGGCGGCGATCTTTCTATGGTTAACCCGGTTGTTGTGCTTCGTGGATCCCCTCAACGGGCGAGTAATGATTCCGGCGCAGGACATGGGCGTGGGTTCGAGCTTTATTACCAAGATGAGTCAGGCTCCGGTCTCCAGCCTCTGCCTCCGAACATGTCAGAGATGCTTCTGGGATCTGGAATCGACAGGCTTCTGGAACAACTTTCTCAGATTGAAATGAACGGTATTTCGAGTTTCGAGCCACCTCCGGTTTCCAAAGCTGCAATTGATTCATTGCCGACGGTTGAGATTCATGATAATCATCTTGCGACGGAATCACACTGCGCCGTTTGTATGGAACTTTTTGAATTGGGCACAAATGCTCGGGAATTACCTTGCAGGCACATTTACCATTCGGAATGCATCTTGCCGTGGCTTGCGCTCCGGAATACTTGCCCTGTTTGCCGGCAGGAGCTCCCGGCAGATGCGCAGAACGTTAACGGTCCTGGTTCTGGGAATTCTCTCTCTTTGAACAACGAAGACAATGTGGGGTTGACCATTTGGAGGCTTCCTGGAGGTGGCTTCGCTGTGGGAAGGTTCGCTGGCGGGAGAAGAAGTTCTTATGAACGAGAGCTTCCTGTTGTGTACACAGAAATGGACGGTGGTCTCGGAAACGGCGGCGAACCGAGGAGGGTGACTTGGTCGACGACGACGGACAGTCGAGGAAGAGACAGTGGAGGTGGAGGATTCCGCAAAATGTTTCGCAATCTTTTTGGTTGCTTCACTCCTGGACATCGAACTCAATTCTCTGCTTCTACTTCATCTTCTTCATCATCTTCTTCTTCTCCTTCTCCAGAACCTCGAACCTTAAGGAGTATTAATACTTCTCGTTCTCGTCCCATCGTGAATAATACCATAATGCGTTCCCGAAGAACCTGGTCTCTGGACGGCAATGGCGGAACCAGACCATGGTGA 1203 0.522 MATGTSYWCYRCSRFVRVRRQDTVVCPDCDSGFVEEIEQIPRPASIVDSSRRRSPAASMYMIGNQNPNSGQTLRPALRRTRRSNGGDLSMVNPVVVLRGSPQRASNDSGAGHGRGFELYYQDESGSGLQPLPPNMSEMLLGSGIDRLLEQLSQIEMNGISSFEPPPVSKAAIDSLPTVEIHDNHLATESHCAVCMELFELGTNARELPCRHIYHSECILPWLALRNTCPVCRQELPADAQNVNGPGSGNSLSLNNEDNVGLTIWRLPGGGFAVGRFAGGRRSSYERELPVVYTEMDGGLGNGGEPRRVTWSTTTDSRGRDSGGGGFRKMFRNLFGCFTPGHRTQFSASTSSSSSSSSSPSPEPRTLRSINTSRSRPIVNNTIMRSRRTWSLDGNGGTRPW 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1245 400 CDD RING-H2_RNF126_like 191 232 - -
Lele25g1245 400 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 84 236 - -
Lele25g1245 400 ProSiteProfiles Zinc finger RING-type profile. 191 232 IPR001841 -
Lele25g1245 400 Pfam Protein of unknown function (DUF1117) 259 359 IPR010543 -
Lele25g1245 400 Pfam zinc-ribbon 5 37 IPR039525 GO:0061630
Lele25g1245 400 Pfam Ring finger domain 190 232 IPR001841 -
Lele25g1245 400 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 238 IPR013083 -
Lele25g1245 400 FunFam E3 ubiquitin-protein ligase RING1-like 153 238 - -
Lele25g1245 400 MobiDBLite consensus disorder prediction 344 378 - -
Lele25g1245 400 MobiDBLite consensus disorder prediction 296 324 - -
Lele25g1245 400 SUPERFAMILY RING/U-box 171 238 - -
Lele25g1245 400 SMART ring_2 191 231 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1245 Lele-ChrLele25 8291512 8292714 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g1245 128 241 C3H Transcription Factor Family AT5G01980 40.351 9.17e-24 101