Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1211 ATGGAGAAATGTATTCTAACCTCAATTGCTGCCAGCAACAAGGTTCTAGAGTTGTTCACCATAACTAATTTTTCACCTTGGTCACTTAATGTGGCTGCTTCCACTATTGATATAAAGTTTTTCACTAAAATTCAGTTGGGGAATGACATGGTTCTCGAGGGGAGGATCATTGTGATTGATTCCGTCAAGAGAAATAATACATCACATATGGATGTTAGGGCTGTGGTGGGTTTCATTGTTTCAAACATCTCCTCAAAAGATGTGGTAGATGGGTTTCCTCTTCCTTTCACTTTGCTTACACAAAAAGAGGGCAAATCCCTTTACTCTCACTTAAATTCAACAAGCTTTCTTTTCACCAAGGGGTCAAAATCTCAAGCCCCCAATGAGTTTGGTATATATGATATTAGTGAATCAGATTATGTGAGATTCTTGTGTGGACAAGGTTACAAGACGACAAATCTGATAAACATTACAGATGAAGACGTAAACTATTTTGGGGATCCGTCAATGGCGTTGTTGGTGGCCTGTGGAGGTGATACAGTGAAGTTGTTCGATGCCTCGGTCAAGCCTGGCGATCCTTGCTCATTGAGCTATACCCCTTCTCCTGGATTCCAAGTAAATTCAGTGAAGTGGAACCATACCAATTTGGTTGTGGCCAGTGCTGGAGATGATAAAAAGATCTCGCTGTGGCATAAAAATGGGCAGAGCATGGGTACCATTCCTGTAGCTGGTACTGATAGTGGAGACAAAATAGAGGAGTCTATAATGGCTATCAGCTTCAGTAACAAGGCTTCTAGATATCTATGCTCTGGAGGAAGTGGTCAAGTTGTAAGGATATGGGATTTGCAGAGGAAGCGCTGTATTAAATGGTTGAGAGGTCATACTAGCACTATTACAGGTGTAATGTACAACAGCAAAGATGAACACTTGGCTTCTATCAGCCTTAGTGGGGGCCTTATACTTCATAACCTTGCTTCTGGTGCAAGGGCTGCTGAACTTAAAGACCCAAATGAACAGGTGTTGAGAGTTCTTGATTATTCCCGGATTAGTCGTCACCTTTTGGTGACTGCTGGCGATGATGGTACTGTTCATCTGTGGGATACAACCGGTCGGAGCCCTAAGGTTTCATGGTTGAAGCAACATTCTGCACCGACTGCTGGTATTAGCTTCTCTCCATCCAATGACAAGATAATTGCTAGCGTGGGTCTTGACAAAAAATTATATACTTATGACACTGGTTCTAGAAGACCATCATCTTGTATATCTTATGAGGCACCATTCTCTTCATTGGCCTTTAGGGATGATGGATGGATGCTGGCAGCTGCAACAAGCAATGGTAGGGTTGCTTTCTATGATGTTCGTGGAAAACCACAACCTTTTGTCGTTCTTCATGCTTATGGTAGCTCTGAGGCTGTTACAGGCTTATGCTGGCAAAGGTCAAAACCTGTCAGTGTCAATGAAGCTAATTGCACTGCTGAGACTGCACTTGTGGGAGATGCAGTTGAAGATTCCATCCTTATGCCGGATCCTTTACCTTCTGCAACCTCATCAAGTGTTTCTCTATCTACTGTAGTGACAAGTTCTAGGAATTCTGGTCGTCTAAATGCCTCCGTTGAAGTATCTTCACTTAAATCATCTAGCAATGGATTGGCATCAAGCATGCTAAATGTGTCTAGTGGAGATGAAACACCACATCGAACCCATTTATGGCCTGGTGGAAACCTCTCGAGGCTAAATGCTCCACGTTCTAGTTATAACTTCAAAGATGACATGGAGGTTTTCTCCCCTCTTGTGGATGTTCAACCAATAACACCCTCACTATGGGATGAAAATGGAGCAAAGAAGGATAACATATTTGCAGATAGGAAACCTTCATCACTATTGTTTCCTTCATCTAGTAGGAGATTTCCAAATACAGAGGAGGGCAGCACTGATCATCCAATATTTGATTGGAAATCTGGCTCAATTTCCAAGCAGGATGAAACTCGATCTTCATTTCCACCTGTGGAATCAATTGCTCCCCCATCTTCCAAGGATGAAGCTTCTTCAATCACTCCTCCAGAAGCTTGGGGTGGTGAGAGGTTATCTGAAAGATATACCTACCTCCGTCAATCCATCAATGCACCTTCTCGTTTTGGGACATTGGCTTCTGGTGTTCAGACAGCAGGATCTATGTCTTCTGGATCGCAGGCTTCCTCATCATCAGATGTTACTTCTCTTACAACTTCAAGCATCAATTTTGCCAATTTACGCAGTAAAGATGTCTCTACTAGTCAGGAGACTTCATTAGGTTTTCCTGATCACTTGTCTTCTAACCCATTGTCTATCAATACAAAATCCATTCTCGGACAGGTTAGCCTGGATTCCCCACGAATGTCATCTTTGACGAGACGATTTTCCACTTATGCGGAGAGAATAAGCACTACATCTACCTTCAGTGATGGAGTATCTCTTTCAGTAGGATCACCTAAGATGAAAAAATCTGGAGCAGAAACCAGAGAAGAACTTCTACATAGCTCGCTGCTGAAGTCTGATACATCAGTTTCAACAGAATCAAGCTCCATATTACCTGCAAATGGTATAAACGCACAACAACAGAAAGCATCTCAGTTAGATGCACAGCAAGGTTCTTCATTTACACTTCAGCTTTTTCAACGGACCTTGGAAGAGACTCTAGATTCGTGTGTGAAACCCATACATGAGGATATGAGGAACCTTCATATTGAAATGTTAAGACAGTTTCATCTGCAGGAGACGGAAATGTTCGGCGTGATGAAATCCATTCTGGAGAACCAAGCTGAGTTGATGAAAGAAGTGAAGTCTCTTCGTCAGGAATTTCAGCAGCTCCGGCAAATGCTCTGA 2862 0.4256 MEKCILTSIAASNKVLELFTITNFSPWSLNVAASTIDIKFFTKIQLGNDMVLEGRIIVIDSVKRNNTSHMDVRAVVGFIVSNISSKDVVDGFPLPFTLLTQKEGKSLYSHLNSTSFLFTKGSKSQAPNEFGIYDISESDYVRFLCGQGYKTTNLINITDEDVNYFGDPSMALLVACGGDTVKLFDASVKPGDPCSLSYTPSPGFQVNSVKWNHTNLVVASAGDDKKISLWHKNGQSMGTIPVAGTDSGDKIEESIMAISFSNKASRYLCSGGSGQVVRIWDLQRKRCIKWLRGHTSTITGVMYNSKDEHLASISLSGGLILHNLASGARAAELKDPNEQVLRVLDYSRISRHLLVTAGDDGTVHLWDTTGRSPKVSWLKQHSAPTAGISFSPSNDKIIASVGLDKKLYTYDTGSRRPSSCISYEAPFSSLAFRDDGWMLAAATSNGRVAFYDVRGKPQPFVVLHAYGSSEAVTGLCWQRSKPVSVNEANCTAETALVGDAVEDSILMPDPLPSATSSSVSLSTVVTSSRNSGRLNASVEVSSLKSSSNGLASSMLNVSSGDETPHRTHLWPGGNLSRLNAPRSSYNFKDDMEVFSPLVDVQPITPSLWDENGAKKDNIFADRKPSSLLFPSSSRRFPNTEEGSTDHPIFDWKSGSISKQDETRSSFPPVESIAPPSSKDEASSITPPEAWGGERLSERYTYLRQSINAPSRFGTLASGVQTAGSMSSGSQASSSSDVTSLTTSSINFANLRSKDVSTSQETSLGFPDHLSSNPLSINTKSILGQVSLDSPRMSSLTRRFSTYAERISTTSTFSDGVSLSVGSPKMKKSGAETREELLHSSLLKSDTSVSTESSSILPANGINAQQQKASQLDAQQGSSFTLQLFQRTLEETLDSCVKPIHEDMRNLHIEMLRQFHLQETEMFGVMKSILENQAELMKEVKSLRQEFQQLRQML 953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1211 953 Pfam WD domain, G-beta repeat 352 367 IPR001680 GO:0005515
Lele25g1211 953 Pfam WD domain, G-beta repeat 204 230 IPR001680 GO:0005515
Lele25g1211 953 Gene3D - 105 335 IPR015943 GO:0005515
Lele25g1211 953 MobiDBLite consensus disorder prediction 658 683 - -
Lele25g1211 953 FunFam Protein NEDD1 166 340 - -
Lele25g1211 953 SUPERFAMILY WD40 repeat-like 176 478 IPR036322 GO:0005515
Lele25g1211 953 Gene3D - 336 487 IPR015943 GO:0005515
Lele25g1211 953 Gene3D - 37 54 - -
Lele25g1211 953 ProSiteProfiles Trp-Asp (WD) repeats profile. 353 367 IPR001680 GO:0005515
Lele25g1211 953 Coils Coil 925 953 - -
Lele25g1211 953 MobiDBLite consensus disorder prediction 629 690 - -
Lele25g1211 953 Gene3D Peptidase S8/S53 domain 1 36 IPR036852 GO:0004252|GO:0006508
Lele25g1211 953 SMART WD40_4 326 367 IPR001680 GO:0005515
Lele25g1211 953 SMART WD40_4 233 281 IPR001680 GO:0005515
Lele25g1211 953 SMART WD40_4 371 411 IPR001680 GO:0005515
Lele25g1211 953 SMART WD40_4 414 452 IPR001680 GO:0005515
Lele25g1211 953 SMART WD40_4 191 231 IPR001680 GO:0005515
Lele25g1211 953 SMART WD40_4 284 323 IPR001680 GO:0005515
Lele25g1211 953 PANTHER PROTEIN NEDD1 166 953 IPR044621 GO:0010968|GO:0140496
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1211 Lele-ChrLele25 8032388 8041222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g1211 254 453 Miscellaneous Gene Families AT5G08390 22.857 2.67e-07 52.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1211 25 8032388 8041222 Lele27g0867 27 16684710 16698802 hybridization
Lele25g1211 25 8032388 8041222 Lele28g1220 28 8019702 8029316 hybridization