Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1209 ATGGGTCCTTCAGAAGTCAATCATCTCTCTCACCCTTGTATATATGGGGATTTTGCTTCCTCATACTCCGAGAGGAAGTCTGGATTTATGAAATGGATTAGTAAGCTTTTCAAAGGTGGGTCCAATCGAGGAAGGGGTGGTCGTCATCTCCACCAGCCTACAGAGGAAAATTTGGTTTGGCGTAATCCAGCAAGATCCTTGGACGACCATTCTAGAGCTCAGAAGGAGAAAGAGGATCTGGACCACGCAATTTCCCTTTCTTTAGCTGATGATTTGAAGAGACCAAATGGATATAGATGGCATGGAGACATTGATGAAGATTATGCGAGTGAATATCAAGGAAACCAGAACTCATCTGCACACCCTCCATATACCCGGGCAACGTACGGGGAAATTAGGCTATGTGGTGGGTGCAAGCGGGAGATAGTCTACGGGAATTGTTTAAGATGCAATAATACTTTTTTTCATCCAGGGTGCTTTCGCTGTCACTCTTGTCGCTACCCCATTACTGAGCATGAGTTTTCTTTATCAGGGAAGCATCCGTATCACAAGTCCTGTTTCAAAGAGTTGACCCACCCAAAATGTGAAGTTTGCTTCCAATTTATTCCTATAAATGCTGCTGGTTTGATTGAGTATAGGTGTCACCCATTTTGGTCCCAAAAATATTGTCCAGCTCATGAATATGATGATACAGCCCGCTGCTGTAGTTGTGAAAGATTGGAGTCTTTGAATGCAAAATACTATAGTTTGGAAGATGGGCGGACTTTATGTTTAGAGTGTATGGAGTCAGCTATTATGGACACTGGAGATTGTCAACCTCTTTACCATGCTATTAGAGATTATTATGAAGGAATGAACATGAAAATAGACCAACAAATTCCTATGCTTCTGGTTGAGAGGCAAGCACTCAATGAAGCTATTGTTGGGGATAAAAATGGTTACCATCACATGCCGGAGACAAGAGGCTTGTGCCTTTCTGAAGAGCTGACTGTCACCAGTATTCATCGAAGGCCAAGAATTGGAGGCCACCGGCTGATCGGAATGAGAACCCAACCTCAAAAGTTAACTAGAAAATGTGAAGTTACAGCTATTCTTGTTCTCTACGGTCTTCCAAGGTTACTCACAGGCGCTATCCTCGCCCATGAGTTAATGCACGGCTGGTTACGCCTTAAAGGTTACCGTAATCTTAATCCTGAAGTAGAGGAAGGAATCTGTCAGGTTTTGTCTTATATGTGGCTTGAGTCAGAAGTGATGCCTGGCCTTAAAAGCATGCCTTCCACTTCAACAGCTTCTTCTTCCTCCTCCTCCTCCTCTTCCTACTACTACTCATCATCATCATCATCATCTAAGAAAGGAGCCAAATCTGAAGTTGAAAATAAACTGGGTCAGTTTTTCATGAATCAGATTGCCAATGATTCTTCTCCAGCATATGGGGGTGGCTTTAGAGCTGCTAATGAGGCAGTGAACAAATATGGTTTACGTAGTACTCTTGAACATATTCGTTTGACTGGTAGTTTCCCACTGTAA 1527 0.4296 MGPSEVNHLSHPCIYGDFASSYSERKSGFMKWISKLFKGGSNRGRGGRHLHQPTEENLVWRNPARSLDDHSRAQKEKEDLDHAISLSLADDLKRPNGYRWHGDIDEDYASEYQGNQNSSAHPPYTRATYGEIRLCGGCKREIVYGNCLRCNNTFFHPGCFRCHSCRYPITEHEFSLSGKHPYHKSCFKELTHPKCEVCFQFIPINAAGLIEYRCHPFWSQKYCPAHEYDDTARCCSCERLESLNAKYYSLEDGRTLCLECMESAIMDTGDCQPLYHAIRDYYEGMNMKIDQQIPMLLVERQALNEAIVGDKNGYHHMPETRGLCLSEELTVTSIHRRPRIGGHRLIGMRTQPQKLTRKCEVTAILVLYGLPRLLTGAILAHELMHGWLRLKGYRNLNPEVEEGICQVLSYMWLESEVMPGLKSMPSTSTASSSSSSSSSYYYSSSSSSSKKGAKSEVENKLGQFFMNQIANDSSPAYGGGFRAANEAVNKYGLRSTLEHIRLTGSFPL 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1209 508 CDD LIM_DA1 135 187 - -
Lele25g1209 508 ProSitePatterns LIM zinc-binding domain signature. 135 169 IPR001781 -
Lele25g1209 508 Gene3D Cysteine Rich Protein 127 202 - -
Lele25g1209 508 ProSiteProfiles LIM domain profile. 133 193 IPR001781 -
Lele25g1209 508 SMART lim_4 134 186 IPR001781 -
Lele25g1209 508 Pfam Protein DA1 284 503 IPR022087 -
Lele25g1209 508 FunFam Protein DA1-related 2 123 188 - -
Lele25g1209 508 Pfam LIM domain 135 188 IPR001781 -
Lele25g1209 508 PANTHER PROTEIN DA1-RELATED 2 32 507 IPR045218 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1209 Lele-ChrLele25 8020041 8024492 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele25g1209 DA1-like 4.4e-101 CL0126
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1209 25 8020041 8024492 Lele25g1209 25 8020041 8024492 CCT
Lele25g1209 25 8020041 8024492 Lele26g1226 26 7995943 8000460 CCT
Lele25g1209 25 8020041 8024492 Lele27g0868 27 16707347 16711780 CCT
Lele25g1209 25 8020041 8024492 Lele28g1219 28 8006275 8010721 CCT
Lele25g1209 25 8020041 8024492 Lele25g1209 25 8020041 8024492 ECH
Lele25g1209 25 8020041 8024492 Lele27g0868 27 16707347 16711780 hybridization
Lele25g1209 25 8020041 8024492 Lele28g1219 28 8006275 8010721 hybridization