LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele25g1190	ATGGTGAAGGGACGCCAAGGAGAGCGAGTCAGACTCTATGTTCGAGGTTCAATCCTAGGATACAAGAGGTCCAAGTCAAACCAATACCCAAATACATCACTTATCCAGATTGAGGGAGTGAACTCCAAGGAAGAGGTTGCATGGTACTGTGGCAAGCGCATGGCATACATTTACAAGGCCAAGGTGAAGAAAAACGGAAGCCACTATCGCTGCATTTGGGGTAAGGTTACCCGGCCTCATGGTAACAGTGGTGTTGTACGTGCCAAATTTAAGTCAAATCTGCCACCCAAATCAATGGGAGCAAAGGTAAGAGTCTTCATGTATCCAAGCAATATTTGA	339	0.4602	MVKGRQGERVRLYVRGSILGYKRSKSNQYPNTSLIQIEGVNSKEEVAWYCGKRMAYIYKAKVKKNGSHYRCIWGKVTRPHGNSGVVRAKFKSNLPPKSMGAKVRVFMYPSNI	112

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele25g1190	112	SUPERFAMILY	Translation proteins	12	106	IPR009000	-
	Lele25g1190	112	Hamap	50S ribosomal protein L35Ae [rpl35ae].	14	106	IPR001780	GO:0003735\|GO:0005840\|GO:0006412
	Lele25g1190	112	ProSitePatterns	Ribosomal protein L35Ae signature.	74	95	IPR018266	GO:0003735\|GO:0005840\|GO:0006412
	Lele25g1190	112	FunFam	60S ribosomal protein L35a	7	112	-	-
	Lele25g1190	112	PANTHER	60S RIBOSOMAL PROTEIN L35A	2	112	IPR001780	GO:0003735\|GO:0005840\|GO:0006412
	Lele25g1190	112	Gene3D	translation elongation factor selb, chain A, domain 4	6	112	IPR038661	-
	Lele25g1190	112	Pfam	Ribosomal protein L35Ae	12	106	IPR001780	GO:0003735\|GO:0005840\|GO:0006412

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele25g1190	Lele-ChrLele25	7839753	7841052	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele25g1190	1	112	Cytoplasmic Ribosomal Protein Gene Family	AT1G74270	91.071	2.99e-74	214

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele25g1190	25	7839753	7841052	Lele25g1198	25	7927298	7929706	CCT
	Lele25g1190	25	7839753	7841052	Lele26g1205	26	7882069	7884434	CCT
	Lele25g1190	25	7839753	7841052	Lele27g0880	27	16794877	16797288	CCT
	Lele25g1190	25	7839753	7841052	Lele28g1197	28	7840679	7843305	CCT
	Lele25g1190	25	7839753	7841052	Lele27g0887	27	16871049	16872485	hybridization
	Lele25g1190	25	7839753	7841052	Lele28g1189	28	7762402	7764038	hybridization