Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1188 ATGCGGCTCCTTCCTTCCTCAGAAGCGTGCCTTTGCCGGACTTCAAATGCTTCACAATACCTTTCAGGTACATCTCGGCATACGTCTTGTTTCGATCCTCCCCTCCTCCTTCCCGGCAATGGCGTTGGCGCTCGGCCAACCCGTCTCTGTCACCACAATGGGGCAAACCCGATCGGGATCAGAGAATTGAGCTTGTACATGTTGTATGGATACAAATTGATCAAGAACGAGGAGTTGGTGTGGCTCAGGAACTGGAGGATCCGCCCCATCATATCAAACCCGGGGAAATCTTGGAATCGAGCGGCTGAGGGAGGGAAAGACTTCGTAATAACGCTGGCAAAAGAGGAGGTGGAAACAGTGACCGAAGTCATTGCCGACCGAGATGGTGGTGATGTTGACGCGAGGGTAGAAGGGGACGACGTGATGGTACAGCCACTGGACGGCGTTGGAGCAGTTGGTGGCAATGGGGGAGACGAAGCTGTTGGGAATGGTGAGAAAGACGGAGACATCGGTGTACAAGAAGGCTCGAATGATATGAGGGTCAGAATCTCGGAGAAGGAGAGAGTTGATGTTGAGGGAATGAAGGGCAGTGGCAATGCGGCGGGTTGCGAAGAGACTGAGGTGGGATATGGCAAGGAGGAAGAGGAAGGGAAGTGCAAGGCTTGCGAGAAAACGGTCTATCCCGTGGATCAGCTATCCGCTGATGGCGTTGCTTACCATAAAGCTTGCTTCAGGTGCTCTCATTGCAAAGGAACATTAAAGCTAAGCAACTATTCCTCGATGGAGGGTGTTCTCTACTGTAAGCCTCATTATGAGCAGCTCTTCAAGGAGACAGGCAGTTTCAACAAGAACTTCCAGTCACCTGCAAAGCTAGCTGATAAGACAACTCCTGAGCTGGTAACTGTTGAGGGCCAAGCCTATCACAAATCATGTTTCAAGTGTTCACATGGTGGCTGTCCCATATCACCATCAAATTATGCAGCTCTTGAGGGCATTTTGTATTGCAAACACCATTTCTCCCAGCTTTTTAAGGAGAAAGGAAGCTATAGTCATCTTATCAAGTCAGCGTCAACGAGAAGAGCAGCCACCCCTGTTCCAGAATCCTAA 1107 0.5041 MRLLPSSEACLCRTSNASQYLSGTSRHTSCFDPPLLLPGNGVGARPTRLCHHNGANPIGIRELSLYMLYGYKLIKNEELVWLRNWRIRPIISNPGKSWNRAAEGGKDFVITLAKEEVETVTEVIADRDGGDVDARVEGDDVMVQPLDGVGAVGGNGGDEAVGNGEKDGDIGVQEGSNDMRVRISEKERVDVEGMKGSGNAAGCEETEVGYGKEEEEGKCKACEKTVYPVDQLSADGVAYHKACFRCSHCKGTLKLSNYSSMEGVLYCKPHYEQLFKETGSFNKNFQSPAKLADKTTPELVTVEGQAYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFSQLFKEKGSYSHLIKSASTRRAATPVPES 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1188 368 ProSiteProfiles LIM domain profile. 217 277 IPR001781 -
Lele25g1188 368 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 313 352 - -
Lele25g1188 368 CDD LIM1_SF3 218 277 - -
Lele25g1188 368 Gene3D Cysteine Rich Protein 292 351 - -
Lele25g1188 368 Gene3D Cysteine Rich Protein 213 283 - -
Lele25g1188 368 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 215 244 - -
Lele25g1188 368 SMART lim_4 218 270 IPR001781 -
Lele25g1188 368 SMART lim_4 292 338 IPR001781 -
Lele25g1188 368 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 245 285 - -
Lele25g1188 368 ProSitePatterns LIM zinc-binding domain signature. 219 253 IPR001781 -
Lele25g1188 368 MobiDBLite consensus disorder prediction 153 173 - -
Lele25g1188 368 PANTHER OS06G0237300 PROTEIN 298 354 IPR045268 -
Lele25g1188 368 FunFam LIM domain and actin-binding 1 213 283 - -
Lele25g1188 368 Pfam LIM domain 219 274 IPR001781 -
Lele25g1188 368 Pfam LIM domain 299 342 IPR001781 -
Lele25g1188 368 ProSiteProfiles LIM domain profile. 282 345 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1188 Lele-ChrLele25 7823198 7827848 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Lele25g1188 LIM 6.5e-12 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1188 25 7823198 7827848 Lele25g1188 25 7823198 7827848 ECH
Lele25g1188 25 7823198 7827848 Lele27g0889 27 16883378 16888339 hybridization
Lele25g1188 25 7823198 7827848 Lele28g1187 28 7747359 7752032 hybridization