Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1186 ATGGAAACTCTGTATCCATCTTCTTCTTTTATGCCAAACTCAGACTGGTTCGTTCAAGATTGCATCAGCAGCAACAACACAGAATGGACGAGAGAGGAGAACAAGAGGTTCGAGAGTGCCCTTGCCATATACGATAAGGAAACCCCAGATAGGTGGCTGAAGGTGGCGGCCATGATCCCAGGAAAAACCGTGTACGATGTGATCAAGCAGTACAGAGAACTCGAAGAAGACATCGGCGAAATCGAAGCGGGTCGGGTCCCGATACCCGGGTATCTGGCTTCTCCTTTCACCTTTGAGTTGGTTGATCACCAGAATTATGATGCATACAGAAAGAGGCCTGTGGCTTTCAAGGGTTCTTCTTCTGATCATGAGAGAAAGAAAGGGGTTCCTTGGACTGAAGAAGAACACAGGCGTTTTCTGATGGGGCTTCTTAAGTATGGCAAAGGAGATTGGAGGAACATATCGAGGAATTTCGTGGTGACAAAGACACCGACACAAGTGGCGAGTCATGCTCAAAAGTACTACATAAGGCAGAAGCTTTGTTCTGGAGGGAACAACAAAAGGAGACCAAGTATACACGACATAACCATTGTTAACCTCACAGAACCTAGTACCAACCCACAAGACAACAACAACAAGCCCCTTCATCAATTCAATGATCATCATCAGTCTCCTATGTTCTCACCAAATCAGATGCCAGAGGATATTGATGGGGTTTTCAACCCTAGTTGTGACGACAGTTTCTTCCATTCATCTTCATCTGATATTGATCGTGTCCTTCATGAGGCTTATGGTTTTAGGGCAAATTCTGGGGACTTCAGTAACCCAGCTGCTGTCTTAGGTATTCATGCATTGTAA 858 0.4534 METLYPSSSFMPNSDWFVQDCISSNNTEWTREENKRFESALAIYDKETPDRWLKVAAMIPGKTVYDVIKQYRELEEDIGEIEAGRVPIPGYLASPFTFELVDHQNYDAYRKRPVAFKGSSSDHERKKGVPWTEEEHRRFLMGLLKYGKGDWRNISRNFVVTKTPTQVASHAQKYYIRQKLCSGGNNKRRPSIHDITIVNLTEPSTNPQDNNNKPLHQFNDHHQSPMFSPNQMPEDIDGVFNPSCDDSFFHSSSSDIDRVLHEAYGFRANSGDFSNPAAVLGIHAL 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1186 285 Gene3D - 129 180 - -
Lele25g1186 285 CDD SANT 130 174 IPR001005 -
Lele25g1186 285 FunFam Transcription factor SRM1 22 88 - -
Lele25g1186 285 SMART sant 127 177 IPR001005 -
Lele25g1186 285 SMART sant 25 77 IPR001005 -
Lele25g1186 285 CDD SANT 28 74 IPR001005 -
Lele25g1186 285 FunFam transcription factor MYB1R1 129 180 - -
Lele25g1186 285 ProSiteProfiles SANT domain profile. 131 179 IPR017884 -
Lele25g1186 285 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 123 179 IPR017930 -
Lele25g1186 285 Gene3D - 21 88 - -
Lele25g1186 285 ProSiteProfiles SANT domain profile. 24 79 IPR017884 -
Lele25g1186 285 ProSiteProfiles Myb-like domain profile. 123 175 IPR001005 -
Lele25g1186 285 SUPERFAMILY Homeodomain-like 125 179 IPR009057 -
Lele25g1186 285 SUPERFAMILY Homeodomain-like 27 78 IPR009057 -
Lele25g1186 285 Pfam Myb-like DNA-binding domain 130 174 IPR001005 -
Lele25g1186 285 Pfam Myb-like DNA-binding domain 28 73 IPR001005 -
Lele25g1186 285 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 24 233 IPR043363 -
Lele25g1186 285 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 126 178 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1186 Lele-ChrLele25 7810559 7811509 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele25g1186 Myb_DNA-binding 1.2e-10 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1186 25 7810559 7811509 Lele25g1186 25 7810559 7811509 CCT
Lele25g1186 25 7810559 7811509 Lele26g1192 26 7759642 7760603 CCT
Lele25g1186 25 7810559 7811509 Lele27g0892 27 16899624 16900574 CCT
Lele25g1186 25 7810559 7811509 Lele28g1184 28 7735073 7736031 CCT
Lele25g1177 25 7738359 7740074 Lele25g1186 25 7810559 7811509 CCT
Lele25g1186 25 7810559 7811509 Lele26g1192 26 7759642 7760603 ECH
Lele25g1186 25 7810559 7811509 Lele25g1186 25 7810559 7811509 ECH
Lele25g1186 25 7810559 7811509 Lele27g0892 27 16899624 16900574 ECH
Lele25g1186 25 7810559 7811509 Lele28g1184 28 7735073 7736031 ECH
Lele26g1192 26 7759642 7760603 Lele25g1186 25 7810559 7811509 ECH
Lele27g0892 27 16899624 16900574 Lele25g1186 25 7810559 7811509 ECH
Lele28g1184 28 7735073 7736031 Lele25g1186 25 7810559 7811509 ECH
Lele25g1186 25 7810559 7811509 Lele27g0892 27 16899624 16900574 hybridization
Lele25g1186 25 7810559 7811509 Lele28g1184 28 7735073 7736031 hybridization