Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1185 ATGGCTATGGACGATCGAAACGTGAGGGGAATGAGCACCGGGTTAACCGATGTGGTGCCGGAACGTGTTATGGCTTTTATTCATGACCCCAAAGATCGGGATGCGATTTCTCTCGTTTGCCGGCAGTGGTATGAGATGGACTGCTTGACCCGAAAGCACGTGACGATTGCTCTCTGCTATACGACCACCCCGGACCAACTCCGACGGAGATTTCCGCACCTCGAGTCGCTGAAGCTGAAAGGGAAACCAAGGGCGGCGATGTTCAATTTGATTCAGGATGATTGGGGAGGATATGTGGGTCCTTGGATTAAAGAGATTGCAAAATATTTTGATTGTTTGAAGTCCCTTCATTTCCGTCGCATGATTGTGAGGGATTCCGACCTTGATCTTCTTGCGCGGTCACGGGGGGACGTTCTTCAAGCTCTTAAACTCGACAAGTGTTCTGGTTTTTCCACGGATGGCCTTTACCATATCGGCCGGTCTTGCAGGAATTTAAGAGTCTTGTTTTTGGAGGAGAGCCAAATTGTTGAGAATGATGGCGAATGGCTACATGAGCTTGCTTTGAATAATACTGTTCTTGAGGCTCTAAATTTTTACGTGACCGATCTTATCAATATCAGAATTGAGGACCTTGAACTTATTGCAAAAAACTGTCGCAACTTGGTTTCTGTGAAAATTACTGATATTGAGATCCTGAAGCTTGTAAACTTCTTTCGTTCTGCATCTGCCCTAGAAGAGTTTTGTGGAGGCTCCTACAACGAGCAGCCGGAAAAGTACGCTGCCGTATCATTTCCTGCTAAGTTATGTCGATTGGGTTTGACATATATTGGAAAGAATGAACTTCCAATAGTATTCCCTTTCGCATCCCTTCTAAAAAAGTTGGATCTCCTATATTCGATGTTGGATACAGAGGATCATTGTACAATAATCCAAAAGTGCCCCAACTTGGAAGTCCTTGAGTCAAGGAATGTAATCGGTGATAGAGGACTCGAAGTTCTTGCACAAAGCTGTAAGAGGCTCAAGAGACTCAGGATTGAGCGAGGAGATGATGAGCAAGGAATGGAGGATGAAGAAGGTGTTGTTTCTCAGAGAGGGTTGATTGCTCTGTCACAGGGCTGTCCAGAACTCGAATATCTGGCTGTTTATGTATCTGACATTACAAATGCATCCCTAGAACAAATTGGCACTCACATGAAAAACCTCACTGATTTCCGCCTCGTCTTGCTAGACCGTGAGGCAACAATAACAGATTTACCTCTTGACAATGGGGTGAGAGCTTTATTAAGAGGTTGTGATAAGCTCAGAAGATTTGCTCTGTATCTTCGCTCTGGGGGCCTGACCGATGTTGGCCTCGCCTACATCGGGCAATACAGCCCAAATGTGAGATGGATGCTTCTGGGTTATGTAGGGGAATCTGATGAAGGGCTTCTGGAGTTCTCAAGGGGCTGCCCTAGCCTTCAAAAGCTTGAAATGAGAGGCTGTTGCTTCAGTGAGTATGCATTAGCCGTGGCCGCCACACGACTGACTTCTCTAAGGTATCTATGGGTGCAAGGGTATAGGCAATCTGCATCTGGGCGTGATCTTTTTGCAATGGCAAGGCCCTTCTGGAATATTGAATTGATTCCTTCTAGGAGGGTTGTTGTTACTTATCAAAGTGGAGAACCTGTAGTGGTTGAGCATCCAGCACATATTCTTGCATATTACTCTCTTGCAGGACCAAGATTAGATTGTCCAGATTCTGTTGTTCCTCTGGATCCAACAGCAGCAGCATATGTTGAAAGCTAG 1785 0.4566 MAMDDRNVRGMSTGLTDVVPERVMAFIHDPKDRDAISLVCRQWYEMDCLTRKHVTIALCYTTTPDQLRRRFPHLESLKLKGKPRAAMFNLIQDDWGGYVGPWIKEIAKYFDCLKSLHFRRMIVRDSDLDLLARSRGDVLQALKLDKCSGFSTDGLYHIGRSCRNLRVLFLEESQIVENDGEWLHELALNNTVLEALNFYVTDLINIRIEDLELIAKNCRNLVSVKITDIEILKLVNFFRSASALEEFCGGSYNEQPEKYAAVSFPAKLCRLGLTYIGKNELPIVFPFASLLKKLDLLYSMLDTEDHCTIIQKCPNLEVLESRNVIGDRGLEVLAQSCKRLKRLRIERGDDEQGMEDEEGVVSQRGLIALSQGCPELEYLAVYVSDITNASLEQIGTHMKNLTDFRLVLLDREATITDLPLDNGVRALLRGCDKLRRFALYLRSGGLTDVGLAYIGQYSPNVRWMLLGYVGESDEGLLEFSRGCPSLQKLEMRGCCFSEYALAVAATRLTSLRYLWVQGYRQSASGRDLFAMARPFWNIELIPSRRVVVTYQSGEPVVVEHPAHILAYYSLAGPRLDCPDSVVPLDPTAAAYVES 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1185 594 SUPERFAMILY RNI-like 92 404 - -
Lele25g1185 594 SMART LRR_CC_2 431 457 IPR006553 -
Lele25g1185 594 SMART LRR_CC_2 136 161 IPR006553 -
Lele25g1185 594 SMART LRR_CC_2 313 336 IPR006553 -
Lele25g1185 594 SMART LRR_CC_2 373 397 IPR006553 -
Lele25g1185 594 Pfam F-box 13 53 IPR041567 -
Lele25g1185 594 FunFam Coronatine-insensitive protein 1 52 587 - -
Lele25g1185 594 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 31 248 - -
Lele25g1185 594 SUPERFAMILY RNI-like 366 521 - -
Lele25g1185 594 Pfam Transport inhibitor response 1 protein domain 72 118 IPR041101 -
Lele25g1185 594 Gene3D Ribonuclease Inhibitor 52 588 IPR032675 -
Lele25g1185 594 Gene3D - 3 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1185 Lele-ChrLele25 7800085 7803831 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g1192 26 7759642 7760603 Lele25g1185 25 7800085 7803831 CCT
Lele27g0892 27 16899624 16900574 Lele25g1185 25 7800085 7803831 CCT
Lele28g1184 28 7735073 7736031 Lele25g1185 25 7800085 7803831 CCT
Lele25g1185 25 7800085 7803831 Lele25g1185 25 7800085 7803831 CCT
Lele25g1185 25 7800085 7803831 Lele26g1191 26 7749338 7753330 CCT
Lele25g1185 25 7800085 7803831 Lele27g0893 27 16907557 16911150 CCT
Lele25g1185 25 7800085 7803831 Lele28g1183 28 7724630 7728618 CCT
Lele25g1185 25 7800085 7803831 Lele25g1191 25 7843674 7846567 CCT
Lele25g1185 25 7800085 7803831 Lele26g1199 26 7796049 7799656 CCT
Lele25g1185 25 7800085 7803831 Lele27g0886 27 16865156 16867547 CCT
Lele25g1185 25 7800085 7803831 Lele28g1191 28 7765905 7769049 CCT
Lele25g1185 25 7800085 7803831 Lele25g1185 25 7800085 7803831 ECH
Lele25g1185 25 7800085 7803831 Lele27g0893 27 16907557 16911150 hybridization
Lele25g1185 25 7800085 7803831 Lele28g1183 28 7724630 7728618 hybridization