Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1182 ATGGAAGATGGCATGTCAGGGTTTTGTATCAGAGCAGGAAGTTTTCGGAGAGGTGATAGTAATAATGGGAATAGTGGAAGTAGTGGAACTAAGTGTGGTCGTTGGAATCCAACAACAGAACAGGTTAAGCTTCTAACTGACTTGTTCATGTCTGGTCTCAGAACTCCAAGCATCGATCAGATTCAGAAGATCTCCACTGAGCTTAGCTATTATGGCAAGATTGAGAGCAAGAACGTGTTTTATTGGTTTCAGAACCATAAAGCCAGGGAAAGACAGAAGCGTCGCAAGGTCTCATTCCACGACAAGGATCTCAGTAGTAATAATAATATTTGTCCTCAAAACTCTCTGTTATCTTCTTCCACACACAATTTTTGGGAGGTTGATCAAGTTCAAGAGCCAGAGAGAGTGATAGAGACTCTTCAACTGTTTCCATTGAACTCCATTGGTGAATCAGAAGCAGAGAAACTGAGGGGACAAGCAAATAAATATGGGGATGATAGTGCGATGTTTCAGTCGTCAGTAGGGGAACATATGGAGAACCCAGCATTAGATTTGCACTTAAGCTTTCTGTAG 573 0.4188 MEDGMSGFCIRAGSFRRGDSNNGNSGSSGTKCGRWNPTTEQVKLLTDLFMSGLRTPSIDQIQKISTELSYYGKIESKNVFYWFQNHKARERQKRRKVSFHDKDLSSNNNICPQNSLLSSSTHNFWEVDQVQEPERVIETLQLFPLNSIGESEAEKLRGQANKYGDDSAMFQSSVGEHMENPALDLHLSFL 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1182 190 Pfam Homeodomain 32 92 IPR001356 GO:0003677
Lele25g1182 190 ProSiteProfiles 'Homeobox' domain profile. 28 93 IPR001356 GO:0003677
Lele25g1182 190 SMART HOX_1 30 97 IPR001356 GO:0003677
Lele25g1182 190 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 19 109 IPR044555 GO:0003700|GO:0099402
Lele25g1182 190 FunFam WUSCHEL-related homeobox 11 31 99 - -
Lele25g1182 190 SUPERFAMILY Homeodomain-like 28 96 IPR009057 -
Lele25g1182 190 CDD homeodomain 34 94 IPR001356 GO:0003677
Lele25g1182 190 Gene3D - 31 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1182 Lele-ChrLele25 7763149 7763810 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g1182 8 190 Wox Gene Family AT3G11260 52.041 1.62e-57 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Lele25g1182 Homeodomain 4.5e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1182 25 7763149 7763810 Lele25g1182 25 7763149 7763810 CCT
Lele25g1182 25 7763149 7763810 Lele26g1184 26 7690216 7701508 CCT
Lele25g1182 25 7763149 7763810 Lele27g0898 27 16958221 16958888 CCT
Lele25g1182 25 7763149 7763810 Lele28g1177 28 7677047 7677707 CCT
Lele25g1182 25 7763149 7763810 Lele26g1184 26 7690216 7701508 ECH
Lele25g1182 25 7763149 7763810 Lele25g1182 25 7763149 7763810 ECH
Lele25g1182 25 7763149 7763810 Lele27g0898 27 16958221 16958888 hybridization
Lele25g1182 25 7763149 7763810 Lele28g1177 28 7677047 7677707 hybridization