Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1177 ATGGGTTTGAGAGTGTATAATTGTCCCAAGAGACTGCAAAGTTCCTTGTTCAGAGTCCCTCGTTCTGTGTGTCATCCCTGTAAGCCACCAACTGTGTTTCCCTCTTCGTTGCGGAGTCATCTCAATTATGGTAATGATGCTCTGTCTTTCCGCTTGGTTCATCCATTCGCGTTTCGTGGATCAACGGTTTTCAAACTTGAAAGAGGAAAACAAACTTGCACTGCCCATTCTGGGGATGAAGAAACGATGACGAATCTTGCTGAGCAACTTGCGAAGGAATTTGATATCCTAGTCGAAGAAGATGAAGATGACGGAAGGCTCATGGAAGTGATTCATAGAGTCTCTGAGAAAATCCAAAACACGGAGCAGCTAAGTGGCTCGGAAAAGAGTTCTATGGAGCCATTTTGGACCACGAAGCATGATGTTTTGGAGCCTTCTATGTTGGGTATTGAGCCAGAGCCAGCGAGCTGGCCGGAGAGACAGAAAATGCTAAGAGCGTACTTTGAAAGGAAAGTGAACTGTTTGGGAATCCCTTTCTCCATTCGGATGATTCAGAAGAAGCTGCAGTGGCAGAAGAATTTGAAGGAGCCGAATGAATGTACTTACTGTTCTGTGAAGAAGACATTCTCGTCCATGGTCCTCATCATCCACGAGCTTCAAAATTATGCCCTGCAAATAAGGGAAAGCTTGTACTGTGAGGATTTGCAGGGTCTGATGAGAAAAATCCACAGTGATACGGATGCTTCATTTGTGTGGCTCTTCCAGAAGATTCTGTGGAAGACTCCAAGTCTTATGATCTATACCATGGTCCTCCTAGCAAACTTCTCTGTACTTTCCATGAATAACAACACTGCTCTTGCAGCCACTCCTTTGGTTACAGAAGTAAAAATGTTGACCGACAAGAAGAGTGAAGAAGGTTCAGAAGTTGATGTTGATGCTGTTTCTGAGAAGACTCTATGGAATTCGATGTTGGAGGAAGCTAGTAGATTTCAAGAAGAAATAAGGAATGAGGCTTTGGACAATGAGACAGTGAAAATGTTAGTAGCTCCAGTGTATGTGGAGCTTGAAGGAGATGCATATGAGGAATATAGAAGAACAGAGCTCTACTACAAATACCACATAAATCAGGCACCTCAAAGCTCTCTTCTGCTTTCTAACTACGCACAGTTCCTCTACCTTGTTTATCATGACGTTGACAAGGCAGAAGAGTACTTCAGGCGTGCGGTGATGGTGAAGCCACAAGATGCAGAGGCATTGAGCAGATATGCCGACTTCTTGTGGCTAGTAAGAAAGGATCTAAAGGAAGCGGTAGTGAGATACCTGGAAGCAATGGAGGTTGACCCTGACAGCAATCATTACAAGTCCAAGTATGCCACATTTATGTGGAGCACCAGTGACCTAGGAACTTGTTCTCCTTCCTCAGAAAACTCCGACAGCTTCAACCCAGTCCTATGA 1455 0.4433 MGLRVYNCPKRLQSSLFRVPRSVCHPCKPPTVFPSSLRSHLNYGNDALSFRLVHPFAFRGSTVFKLERGKQTCTAHSGDEETMTNLAEQLAKEFDILVEEDEDDGRLMEVIHRVSEKIQNTEQLSGSEKSSMEPFWTTKHDVLEPSMLGIEPEPASWPERQKMLRAYFERKVNCLGIPFSIRMIQKKLQWQKNLKEPNECTYCSVKKTFSSMVLIIHELQNYALQIRESLYCEDLQGLMRKIHSDTDASFVWLFQKILWKTPSLMIYTMVLLANFSVLSMNNNTALAATPLVTEVKMLTDKKSEEGSEVDVDAVSEKTLWNSMLEEASRFQEEIRNEALDNETVKMLVAPVYVELEGDAYEEYRRTELYYKYHINQAPQSSLLLSNYAQFLYLVYHDVDKAEEYFRRAVMVKPQDAEALSRYADFLWLVRKDLKEAVVRYLEAMEVDPDSNHYKSKYATFMWSTSDLGTCSPSSENSDSFNPVL 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1177 484 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 59 464 - -
Lele25g1177 484 Gene3D Tetratricopeptide repeat domain 358 461 IPR011990 GO:0005515
Lele25g1177 484 SUPERFAMILY TPR-like 362 465 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1177 Lele-ChrLele25 7738359 7740074 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele28g1152 28 7495557 7495976 Lele25g1177 25 7738359 7740074 CCT
Lele25g1164 25 7577944 7579902 Lele25g1177 25 7738359 7740074 CCT
Lele25g1177 25 7738359 7740074 Lele25g1186 25 7810559 7811509 CCT
Lele25g1177 25 7738359 7740074 Lele26g1192 26 7759642 7760603 CCT
Lele25g1177 25 7738359 7740074 Lele27g0892 27 16899624 16900574 CCT
Lele25g1177 25 7738359 7740074 Lele28g1184 28 7735073 7736031 CCT
Lele25g1177 25 7738359 7740074 Lele25g1177 25 7738359 7740074 ECH
Lele25g1177 25 7738359 7740074 Lele27g0903 27 16985724 16987085 hybridization
Lele25g1177 25 7738359 7740074 Lele28g1171 28 7653344 7655620 hybridization