Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1165 ATGAGGATTACATTGGACACAGAGGAGACGACATCGGAGCCGAGGCGCTCAACAACGCCCAAAGAAGAAGTTGAATGGGTTCCACTTGAGAAACACCCAGTCTTCGGCTCAACGAATAACTTCATAGAAGGCGATTACCGCGTTGCTTTTTCCAGAAATCTCGTGGCCTGGGATGGATCCTCTCGCCTCTATTTCTGGGAACCTAAGACCAACTGCCTCCATCGTCTGTCTCTTCGGCTGGGCGAGCCTGAGCCTACTTCTATACTTGCTGCTTCCACTTCTAAGGTATTGCGAGCAGATGCGGAGATCAACTTTGCTATACACAAAATCTCTATCAACAGGAATGGATCAGCATTGCTTCTTTTTGGTTCTGAAAGACTGTGTGTTATGTATCTGTATGGACGTACATCCAAAAAGGATGTAAATTTGATTTGCAGGACTATTATGATCGGTTCACAAACATATTTCAAGAGTAGCACTGATATACGTGTGCTAAAAGCTTTATGGCATCCGTATAGTGATTGTCATGTGGGAATCCTTTCTTCTGACTCAGTTTTCAGGCTTTTTAATTTGGCCGTGGATCCTTTGCAACCTGAGCAAGAATATTATTTGCAGCCTGTGGATCCAGGCAGATCCCGAAATGCTTCATCAATGTGCCCAGCTGATTTTTCTTTTGGTGGTGACCACTTATGGGACAGGTTTAGCGTATTTATTTTGTTTGGTGATGGAGCTATTTACATCCTTTGCCCAGTTGTTCCATTTGGAAGTCTCTTCAAATCAGAATCTGTGCTAGAAATATACAATGATGCTCATACGTTTGGGCTCAAATCTGCAAACTCTAAAGCTGTTAGTAATTCAAAATTGGCAATCTCATGGTTGGAAGCAACATTCCCCGAGTTACAAAATCAAGAGACAGAAGAAAACATGTCTGTGCTAAGAGCTCATGCTTATGTTCAATTTGATGCATCTCTTACCCTGCAGGGACCTCTTCCAAGAGTAGGTCAGGGCGGGAATGAAGATTCAGTTGGTCGTAGTGCAGAATGTGAAGGCCGTGCAGTTGGTTTTCTTTATGATCTTGTAAGCAAAGACACAATATTGGTAACTTCTTGGAGTGGTGGGCAATTACAGATAGATGCTCTGGCTGATGAGATCCAGCCTGTGTGGAGTGCTGGTAGTCCTCCACGTGTTCGTGTTGATTCCCACAACCATATTCTTGGCCTTGCCATGATTTGTGAGTCAATAACCAGTGGCCTACCGGAGAAGCTTGATCATACTGTCTGGTTGGGCAATCCACCACCACTGCTGATACTGGCTATTGTTGACTTGGCTCTGCCTCGGATAGTGGAAAGTGGTTATAATATTGCATTGTTTGTGGATCCTCTTATGCCAGAAAGAATATATTCCGTTCATGATGGAGGGATTGATTCAATAGTGTTGCATTTCCTTCCATTCACAAGTCAGGCAAATGGCAAGGATGATACAATGAGAACTCCTTCTGTGCATCCTGTTCTAAATACATGTCAGGGTGGGAGCACCACAGCATCTCCTCTCTGTGGTTTTGCATCTTTGTCAGATTCCTTTGGATATTCATGGATTGTGGCAGTCACTCTTTCTCAAGATTGCATTGTGCTAGAGACGAAAACGTGGAACCTATTGCTGCCACCAAATGTTGATATGGAGAAAAAACCCATTCAATTAGAGGATGAATCAGAAGAGAGAGACATACCAACTATAATTAGCAAAGAATTACTTAGTGGGCCTAGGACGGTACTTGTCCCTCAAGCGTCTCCAAGCTTACGTTCTATTTCACCTGATTCAATTGAAGGCAGATCAGCATTGCATCAGTATTTCAAGCTTTTTCATGAAACTTATGTGGAGTATGCACACAAGGTGTACTTGGAACTCAAGCATCATGCTCCTCAGTTGAAGAAAATTGTTGATGACCAACATGCTCGTTTGGGTGATGCACAGCAGAAGCTTTTGAAAGTCGCGGAGAAGCAGCCACTATTAGTGAAAAGAATAGATCGTGCAGTTCAAATGCATAGTTCTTTGGAAGAGCGCTTGCAACAATTAAAGAACTTACCTGGTGCTCACAAAAAGCCATTATCTAAAGCCGAGCGACAATTCAATTCTGAGCTTGGTAATGGATACCACTTCAGGAAAGTTGAGTTGGATGCTTTGCATTCTTCTGTTGATGCTTTAAGTGCTAGGCTGAGGAGGTACATGCAGGCAACCAAAGCTAATAGTAGCCCCCAAAAGCAAATAACAAGTAGGAAGAGTTATGTTGACAAGGCCCAGATATCGATGCTCAAATCTTCGCTTGAAAAACTTTCACTCTTAAATAGTGAGAATTCGAAAAAGGTTAAGCTTGTTGAGTCTGCATTGAAAACACGGGAAAATGGTGGCAGGGAGTCAAGGCTTCCTAAACCTTGA 2433 0.4303 MRITLDTEETTSEPRRSTTPKEEVEWVPLEKHPVFGSTNNFIEGDYRVAFSRNLVAWDGSSRLYFWEPKTNCLHRLSLRLGEPEPTSILAASTSKVLRADAEINFAIHKISINRNGSALLLFGSERLCVMYLYGRTSKKDVNLICRTIMIGSQTYFKSSTDIRVLKALWHPYSDCHVGILSSDSVFRLFNLAVDPLQPEQEYYLQPVDPGRSRNASSMCPADFSFGGDHLWDRFSVFILFGDGAIYILCPVVPFGSLFKSESVLEIYNDAHTFGLKSANSKAVSNSKLAISWLEATFPELQNQETEENMSVLRAHAYVQFDASLTLQGPLPRVGQGGNEDSVGRSAECEGRAVGFLYDLVSKDTILVTSWSGGQLQIDALADEIQPVWSAGSPPRVRVDSHNHILGLAMICESITSGLPEKLDHTVWLGNPPPLLILAIVDLALPRIVESGYNIALFVDPLMPERIYSVHDGGIDSIVLHFLPFTSQANGKDDTMRTPSVHPVLNTCQGGSTTASPLCGFASLSDSFGYSWIVAVTLSQDCIVLETKTWNLLLPPNVDMEKKPIQLEDESEERDIPTIISKELLSGPRTVLVPQASPSLRSISPDSIEGRSALHQYFKLFHETYVEYAHKVYLELKHHAPQLKKIVDDQHARLGDAQQKLLKVAEKQPLLVKRIDRAVQMHSSLEERLQQLKNLPGAHKKPLSKAERQFNSELGNGYHFRKVELDALHSSVDALSARLRRYMQATKANSSPQKQITSRKSYVDKAQISMLKSSLEKLSLLNSENSKKVKLVESALKTRENGGRESRLPKP 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1165 810 PANTHER NUCLEOPORIN NUP84-RELATED 19 800 IPR037700 GO:0000055|GO:0000056|GO:0006913|GO:0017056
Lele25g1165 810 Coils Coil 674 694 - -
Lele25g1165 810 MobiDBLite consensus disorder prediction 1 22 - -
Lele25g1165 810 Pfam Nuclear pore component 453 789 IPR019321 -
Lele25g1165 810 Pfam Nuclear pore component 29 226 IPR019321 -
Lele25g1165 810 MobiDBLite consensus disorder prediction 791 810 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1165 Lele-ChrLele25 7582400 7588290 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1165 25 7582400 7588290 Lele25g1165 25 7582400 7588290 ECH
Lele25g1165 25 7582400 7588290 Lele27g0914 27 17091660 17097479 hybridization
Lele25g1165 25 7582400 7588290 Lele28g1156 28 7532033 7538068 hybridization