Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1160 ATGGTAGCCTTGCATAATGTTAATGGTTTTTGCAATGGGCTGTGTCACTCTGAGAAAGGTCGCATAGTCATGGGACTTTTTGGAGCTGTGGTTCCAAAAACTGTAGAAAACTTTCGAGCACTTTGTACTGGAGAGAAAGGCGTGGGAAAAAGCGGGAAGCCTCTTCACTACAAAGGAAGCACATTCCATAGGATAATACCCAGCTTTATGGTCCAAGGGGGTGATTTCACCCGTGGTGATGGGCGAGGGGGAGAATCAATCTATGGTTCTAAGTTTGCTGATGAAAACTTCAAAGTGAAGCATAATGGACCAGGATACTTGTCGATGGCGAATGCGGGAACGGACACAAATGGCTCACAATTTTTTATAACAACGGTTAAAACTAGCTGGTTGGACGGTCGGCATGTTGTATTTGGGAAGGTGATCTCGGGGATGGACGTTGTCTACAAGATCGAAGCACAAGGAAGCGCTAATGGCGACCCCAAAGGCAAGGTTCTTATAGTTGACAGTGGCGAATTAACTTCATGA 528 0.4564 MVALHNVNGFCNGLCHSEKGRIVMGLFGAVVPKTVENFRALCTGEKGVGKSGKPLHYKGSTFHRIIPSFMVQGGDFTRGDGRGGESIYGSKFADENFKVKHNGPGYLSMANAGTDTNGSQFFITTVKTSWLDGRHVVFGKVISGMDVVYKIEAQGSANGDPKGKVLIVDSGELTS 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1160 175 SUPERFAMILY Cyclophilin-like 16 173 IPR029000 -
Lele25g1160 175 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 57 74 IPR020892 GO:0003755|GO:0006457
Lele25g1160 175 PIRSF Peptidylpro_ismrse 6 175 IPR024936 GO:0003755
Lele25g1160 175 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 18 169 IPR002130 GO:0000413|GO:0003755
Lele25g1160 175 FunFam Peptidyl-prolyl cis-trans isomerase 10 174 - -
Lele25g1160 175 Gene3D - 13 175 IPR029000 -
Lele25g1160 175 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 18 173 - -
Lele25g1160 175 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 26 41 IPR002130 GO:0000413|GO:0003755
Lele25g1160 175 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 133 148 IPR002130 GO:0000413|GO:0003755
Lele25g1160 175 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 105 120 IPR002130 GO:0000413|GO:0003755
Lele25g1160 175 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 62 74 IPR002130 GO:0000413|GO:0003755
Lele25g1160 175 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 120 132 IPR002130 GO:0000413|GO:0003755
Lele25g1160 175 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 20 172 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1160 Lele-ChrLele25 7533362 7535139 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g1160 20 171 U-box Gene Family AT5G67530 40.260 5.62e-26 101
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1160 25 7533362 7535139 Lele26g1158 26 7510919 7513554 ECH
Lele25g1160 25 7533362 7535139 Lele25g1160 25 7533362 7535139 ECH
Lele25g1160 25 7533362 7535139 Lele27g0920 27 17133338 17136688 hybridization
Lele25g1160 25 7533362 7535139 Lele28g1151 28 7487404 7493158 hybridization