Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1152 ATGGATAGCGAGTTTCCGAAGGAGAATTTTGATTTTCTATGTAACATCTCAAGTCTGCTCGAGCTGTCTGCGACCGATGATCTCGAAACTTTCATAAGGGAAGTACAAGAGAAGGGGTCTGATGTGAACGAGGAAAGCTTTTGGTATGGAAGAAGAATTGGATCAAAGAAGATGGGATTGGAAAAGAGGACGCCTCTCATGGTTGCTTCTTTATTTGGAAGCACCCAAGTGCTGAAGTATATTATTGAAACAGGAAGAGCTGATGTGAACAGGGCCTGTGGTTCCGATAAGGCCACGGCTCTCCATTGTGCTGTTGCCGGTGGCTCTGAAGCCTCACTTCAGATTGTTAAACTCTTGCTCGATGCGAAGGCAGATCCTGATTGCCTTGATGCTTGTGGAAATAAGCCTGTTAATTTGGTTGCTCCTGCCTTCAGTTCTTCATCCAACTTGCGAAGGAAGGTGATGGAGTCGTTGCTTAGAGGTGATGAATTAGGTGGGGGAAGTGATCAAATTATCGAACGGGAGGCTGAGCAACAGAGAACTACAGTGCCTTCTTTATCATCAAAAGAAGCAGCGGAGAAGAAAGAATATCCTGTTGATATATCTTTGCCTGACATAAACAATGGTATATATGGAACGGATGAGTTCAGGATGTACAGTTTCAAGGTGAAGCCGTGTTCAAGGGCATACTCTCATGACTGGACTGAGTGTCCATTTGTTCATCCCGGGGAGAATGCAAGGAGGAGGGATCCACGGAAGTATCCGTACAGCTGCGTTCCTTGCCCGGAGTTCCGCAAGGGAAGCTGCCCCAAGGGGGATGCCTGTGAGTACGCTCACGGTGTTTTTGAGTCATGGCTCCATCCTGCTCAATACCGAACAAGGCTCTGCAAGGATGAGACTGGTTGCTCACGGAAAGTTTGCTTCTTTGCTCACAAACATGAAGAGTTGCGCCCTGTGTATGCTTCCACCGGTTCAGCAATGCCTTCGCCAAAATCCTTTTCAGCTAGTGCGCTCGACACGACAGTTATGAGTCCATTAGCTCTTAGCTCTTCATCTCTGCCGATGTCAACTGTTTCAACACCTCCCTTGTCTCCTTTGGCTGCTTCATCTCCCAAGAGTGGAAGCTTGTGGCAGAACAAAATAAACTTCACCCCACCATCCTTGCAGCTGCCGGGTAGCCGGCTGAAGGCGGCCTTAAGTGCTAGGGATCTTGATTTGGAGATGGAACTGCTTGGGCTAGAAAGTCCAGCTAACCACCACCACCAGCAGCAGCAGTTGATAGAAGAGATAGCTCGAATCTCTTCCCCGTCTTTCCGGAACAAAGAATACAGTAGGGTAGGTGATTTGAAGCCAACTAACCTTGATGACCTTTTGGGATCTGTTGATCCTTCTGTTCTTTCTCAACTTCAGGGACTTTCAGCACAACCTTCAATGCCTAGTCAGCTGCAATCTCCCAATGGGCTTCAGATGCACCAAAACATGAACCACCTTCGCTCGAGCTATCCTTCCAACCTTCCTTCCTCGCCGGCAAGAAATTCATTGGGCTTAGGGTTTGATTCATCGTCTGCTGTGGCAGCAGCAGTGATGAACTCCAGATCTGCAGCGTTTGCAATGCGAAGTCAAAGTTTTATCGATCGTGGAACGATGTTGCCCCACCATTTTGGGCAATCTGCACCTTCCAACACCGCCTGTAGGGTTTCTTCTGCACTTTCAGATTGGAGATCCCCTGATGGGAAATTGGATTGGGGTATGAATGGAGATGAGCTGAACAAACTGAAGAAATCTGCTTCTTTCGGGTTCAGAAACAATGTAAACGCAAAGACCAACATGGCACGGTCTGAAAATTTGGAGCCAGACGTGTCGTGGGTTAATTCGTTGGTTAAAGACGTTCCCTCTGAGCAGCAGCAGCAGCAATTTGATGCAAGTAGAGAGATGCTATCACCATGGGTGGAGCAGCTGTATAGGGAACACGAGCAGATAGTCGCATAA 1989 0.4786 MDSEFPKENFDFLCNISSLLELSATDDLETFIREVQEKGSDVNEESFWYGRRIGSKKMGLEKRTPLMVASLFGSTQVLKYIIETGRADVNRACGSDKATALHCAVAGGSEASLQIVKLLLDAKADPDCLDACGNKPVNLVAPAFSSSSNLRRKVMESLLRGDELGGGSDQIIEREAEQQRTTVPSLSSKEAAEKKEYPVDISLPDINNGIYGTDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGSCPKGDACEYAHGVFESWLHPAQYRTRLCKDETGCSRKVCFFAHKHEELRPVYASTGSAMPSPKSFSASALDTTVMSPLALSSSSLPMSTVSTPPLSPLAASSPKSGSLWQNKINFTPPSLQLPGSRLKAALSARDLDLEMELLGLESPANHHHQQQQLIEEIARISSPSFRNKEYSRVGDLKPTNLDDLLGSVDPSVLSQLQGLSAQPSMPSQLQSPNGLQMHQNMNHLRSSYPSNLPSSPARNSLGLGFDSSSAVAAAVMNSRSAAFAMRSQSFIDRGTMLPHHFGQSAPSNTACRVSSALSDWRSPDGKLDWGMNGDELNKLKKSASFGFRNNVNAKTNMARSENLEPDVSWVNSLVKDVPSEQQQQQFDASREMLSPWVEQLYREHEQIVA 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1152 662 SMART c3hfinal6 255 281 IPR000571 GO:0046872
Lele25g1152 662 SMART c3hfinal6 290 313 IPR000571 GO:0046872
Lele25g1152 662 ProSiteProfiles Zinc finger C3H1-type profile. 255 282 IPR000571 GO:0046872
Lele25g1152 662 PANTHER UNKEMPT FAMILY MEMBER 21 630 IPR045234 -
Lele25g1152 662 Gene3D - 256 318 - -
Lele25g1152 662 SUPERFAMILY Ankyrin repeat 29 138 IPR036770 -
Lele25g1152 662 Pfam Ankyrin repeats (3 copies) 54 128 IPR002110 GO:0005515
Lele25g1152 662 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 260 280 IPR000571 GO:0046872
Lele25g1152 662 Gene3D - 14 200 IPR036770 -
Lele25g1152 662 ProSiteProfiles Ankyrin repeat profile. 96 131 IPR002110 GO:0005515
Lele25g1152 662 SMART ANK_2a 15 44 IPR002110 GO:0005515
Lele25g1152 662 SMART ANK_2a 61 91 IPR002110 GO:0005515
Lele25g1152 662 SMART ANK_2a 96 128 IPR002110 GO:0005515
Lele25g1152 662 FunFam Zinc finger CCCH domain-containing protein 66 213 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1152 Lele-ChrLele25 7432748 7434736 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g1152 16 629 C2H2 Transcription Factor Family AT5G12850 42.097 4.83e-143 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele25g1152 Ank_2 1.4e-07 CL0465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1152 25 7432748 7434736 Lele27g0929 27 17230463 17235988 hybridization
Lele25g1152 25 7432748 7434736 Lele28g1144 28 7414996 7418412 hybridization