LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele25g1144	ATGGCCGGAGTGAAAGGCTCTTGGAGCCCCCAAGAAGACGCCACTCTCATCAAGCTCGTCCAGCAGCACGGCCCTCGCAATTGGTCTCTCATCAGCATCGGCATACCGGGCCGCTCCGGCAAGTCTTGCAGGCTCCGATGGTGCAATCAGCTTAGCCCCGGCGTACAACACCGCCCTTTCACTCCCACCGAAGACGCCCTCATCGTCCAGGCTCACGCCATCCACGGAAACAAGTGGGCTACCATTGCCCGTCTCTTGCCAGGAAGAACCGACAACTCCATTAAGAACCACTGGAACTCCACACTGCGCCGCCGCCGAGCGGCGGAGAGGTCATGTGCGTCCGGATCGTCAGAGTCGGACTCTGTTATGGTAACGAAGAATCGTCCGGAGCCTTGTGATCCTCCCAATGCATCGGACGCGTTGGAGTCGGGGCGACGATTGAAGCGGCAGTGCCTGGGGAGGATTTCGCCGGAAAACAATAGTTACAAGTGTCCAATGGTGGGCCCAGTGACGACGTCGTTGAGTTTGTTACCTCCAGGAGAGAGAGTGGATCACAAAGTTAAAGAAGAGAAGGAGGAACACGAAGATGAAGGGAAAGGCGAGGGCGAGGGCGAAGGTGAAGGGACTGAGAATGCGAAGAGAACGAAGGAAGAAGAAGAGCCGGGCCTGATGAGGATGATGAAGCGGTTGATAGCAGAGGAGGTTAGGAATTACATTGATAGTTTGGGTGCCGATGATAAGCTCGTTCTCAGAACTGGACTGGGCCTTCACATGGACCCATCATCTTTTCATGAGTAA	798	0.5564	MAGVKGSWSPQEDATLIKLVQQHGPRNWSLISIGIPGRSGKSCRLRWCNQLSPGVQHRPFTPTEDALIVQAHAIHGNKWATIARLLPGRTDNSIKNHWNSTLRRRRAAERSCASGSSESDSVMVTKNRPEPCDPPNASDALESGRRLKRQCLGRISPENNSYKCPMVGPVTTSLSLLPPGERVDHKVKEEKEEHEDEGKGEGEGEGEGTENAKRTKEEEEPGLMRMMKRLIAEEVRNYIDSLGADDKLVLRTGLGLHMDPSSFHE	265

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele25g1144	265	ProSiteProfiles	Myb-like domain profile.	5	51	IPR001005	-
	Lele25g1144	265	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	56	106	IPR017930	-
	Lele25g1144	265	CDD	SANT	7	49	IPR001005	-
	Lele25g1144	265	FunFam	MYB transcription factor	5	56	-	-
	Lele25g1144	265	SUPERFAMILY	Homeodomain-like	4	98	IPR009057	-
	Lele25g1144	265	MobiDBLite	consensus disorder prediction	109	143	-	-
	Lele25g1144	265	CDD	SANT	59	102	IPR001005	-
	Lele25g1144	265	MobiDBLite	consensus disorder prediction	181	198	-	-
	Lele25g1144	265	Gene3D	-	59	105	-	-
	Lele25g1144	265	Gene3D	-	4	56	-	-
	Lele25g1144	265	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	1	55	IPR017930	-
	Lele25g1144	265	Pfam	Myb-like DNA-binding domain	59	101	IPR001005	-
	Lele25g1144	265	Pfam	Myb-like DNA-binding domain	5	51	IPR001005	-
	Lele25g1144	265	MobiDBLite	consensus disorder prediction	204	221	-	-
	Lele25g1144	265	PANTHER	MYB PROTEIN-RELATED	5	136	-	-
	Lele25g1144	265	ProSiteProfiles	Myb-like domain profile.	52	102	IPR001005	-
	Lele25g1144	265	SMART	sant	4	53	IPR001005	-
	Lele25g1144	265	SMART	sant	56	104	IPR001005	-
	Lele25g1144	265	MobiDBLite	consensus disorder prediction	173	221	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele25g1144	Lele-ChrLele25	7372483	7373280	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele25g1144	1	115	MYB Transcription Factor Family	AT4G37260	68.966	1.12e-51	169

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Lele25g1144		Myb_DNA-binding	6.6e-16	CL0123