Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1142 ATGACAAGTCGGCAAGATGCTCAGGTGTTCAATTGGCACTATACAGAGCTGGATAACCATAACCTTGAAGTTCGAAGCAGAAAAGTCTTGTTCATCATCTTTCTTTTCTGTTTGATTCTTCTAATGATTCTTCTCTTCCTCTGCGCTCGATGGATCTGCCGGTACCGTGACCACCTTCCGACTGCTTTCCACTCTAGTCAGGTGCGTCACGCGGTGTCTCCGCCGTCGCAAGGTCTCGACCTTGATTCGATCAAGAAATTGCCGATAATCTTGCACCAGGCGCCGTCGGACTCAGATTGCGCATTGGAGGAAACAGAGTGCTGTATTTGCCTCAGCGTGTTCGAAGATGGCGAGAAATTGAAGGTGTTGCCCGGATGCAAGCATTGTTTCCACTGTCAGTGTGTCGATAACTGGCTTATTAATCACTCCAGTTGCCCACTCTGTAGAGCTTCTATCAAAGTTGAAGTTGATTCTTCGTTTCCAGAGATTTTGATTCAGGAACCGCCAATTAGAATCGACCTTCAATTCTAG 531 0.4689 MTSRQDAQVFNWHYTELDNHNLEVRSRKVLFIIFLFCLILLMILLFLCARWICRYRDHLPTAFHSSQVRHAVSPPSQGLDLDSIKKLPIILHQAPSDSDCALEETECCICLSVFEDGEKLKVLPGCKHCFHCQCVDNWLINHSSCPLCRASIKVEVDSSFPEILIQEPPIRIDLQF 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1142 176 SMART ring_2 107 148 IPR001841 -
Lele25g1142 176 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Lele25g1142 176 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 155 IPR013083 -
Lele25g1142 176 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 24 159 - -
Lele25g1142 176 SUPERFAMILY RING/U-box 100 155 - -
Lele25g1142 176 Pfam Ring finger domain 106 149 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1142 Lele-ChrLele25 7369286 7369816 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g1142 3 158 C3H Transcription Factor Family AT3G11110 39.103 1.81e-31 109
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1142 25 7369286 7369816 Lele25g1142 25 7369286 7369816 CCT
Lele25g1142 25 7369286 7369816 Lele27g0937 27 17294258 17294788 CCT
Lele25g1142 25 7369286 7369816 Lele28g1135 28 7354623 7355153 CCT
Lele25g1133 25 7300965 7302788 Lele25g1142 25 7369286 7369816 CCT
Lele25g1142 25 7369286 7369816 Lele25g1154 25 7459199 7465760 CCT
Lele25g1142 25 7369286 7369816 Lele26g1153 26 7446381 7451113 CCT
Lele25g1142 25 7369286 7369816 Lele27g0927 27 17204610 17210856 CCT
Lele25g1142 25 7369286 7369816 Lele28g1146 28 7438307 7444097 CCT
Lele25g1142 25 7369286 7369816 Lele27g0937 27 17294258 17294788 hybridization
Lele25g1142 25 7369286 7369816 Lele28g1135 28 7354623 7355153 hybridization