Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1135 ATGAAAAGGAACTGGAATTTCAGTCGGTACAAGGATCATCGGGGACTTCTCCGCTTTTGGGTGGTGTGCTTGCTCTTTCAGAGTTTGTTGGGTATTTGCTGCTCTTTAAATGACGAAGGCAAAGCGCTCTTGAAGTTGAGGCAGAGGATATTGAGTGACCCGTTTGGTGCTCTGTCAAATTGGATTGATGAAGGAGAAATTGACCCGTGCAATTGGTTCCGAGTTCAGTGCGTAGATGGAAGAGTGGTGGTCTTGAATTTGAAAGATCTTTGCCTTGGAGGAACTCTGGCACCTGAGCTTGCGAACCTTGTTCATATTAAGTCCATAATTTTGCGAAACAATTCTTTCTATGGGATCATCCCAGAAGAAATTGCCAAATTGAAAGAGTTGGAAGTTTTGGATTTGGGATACAACAACTTCAGTGGATCTCTACCAGCAGATCTTGGGAGTAATATCTCTCTATCCATCCTTTTGCTGGACAACAATGAGCTTCTTGGTGGGTTCTCTCCCGAAATTAATGAACTGAAGATACTTTCTGAAAGTCAAGTGGACGAAAACCAGCTAACTAATGCAGCTAAAATGCCATCTTGTGCAAGCAGATCCATTCCACAGAATGTTGGCCAAGACAGTGTGGCTCTGCGAAGACTACTGCAAACTAGAATTGGAAGTCCTTTAAATCGTGCAGCCGATTTCTCTTCTGCCCCCACCCCTGCTGCATCGCCATCAACTTCCCCATCCCCTTCAGCAGCACCACCTATAACACCAAATAACACTTCTGCTGATAGAAATACTTCTGCATCCCCTTCTCAAAAATTACCTGAAGCAAGATCCAAAAATACCTCAAACAAAAATCATGTTGCAACTTTGGTTGGCGTTATAGGTGGTGGTGTATTTCTTATCTTAATCGCCAGCATATACATCTGTAGAACCAACAAAGTTACTACTGTCAAACCTTGGGCAACAGGACTGAGTGGACAGCTTCAGAAGGCATTTGTAACAGGTGTGCCAAAGTTAAAAAGGTCCGAGCTCATAGCAGCATGTGAAGATTTTAGCAATGTAATTGGTACCTCACCAATTGGAACAGTGTACAAGGGGACTTTATCTAGCGGAGTTGAAATTGCCGTGGCATCAGTTACTTTGACATCACTGAATGCTTGGTCAAAGACTTTAGAAGTACAGTTTAGGAAAAAGATTGATATGTTATCAAAAGTGAATCACAAGAATTTTGTCAATCTACTTGGGTATTGTGAGGAAGAGGAGCCTTTCACCAGAATGGTGGTTTTTGAATATGCACCCAATGGAACACTCTTTGAGCATTTACACATTAAAGAAGCTGAGCACTTGGATTGGATAACAAGACTTAGAATTGCAATGGGCATGGCATACTCCCTGCAATACATGCACCAGCTAGACCCTCCTGTAGCCCTTAGCAATATGAACTCTTCCTCCATCTTTCTCACCGAGGACTACGCCGCCAAAATTGCAGATTTGAGTTTCTCATATGAAACATCTGAGATGAAGACCAAGGGCAGTAAACACTTTGATAATCCATTAGCAAGTACACAAAGCAACGTTTATGACTTCGGTGTTATACTATTCGAAATGATAACATCCAGAGTCCCTTATTCAGTCGATAATAGCTCACTCGAAAACTGGGCATTGGATTATTTACAAGGAGACCGCTGTCCCTTGAGAGAAATGGTCGATCCAACTCTAGCCTCTTTCGACGAAGAGAAGCTAGAACAAGTTGCAGAATTGATCAAATCTTGTGTTGACCCTGATCCAAAGCAAAGACCAAGTATGAAAGATGTTAGTACGAGGCTGAGAGATATAACAAACATAACACCTGAAGCAGCCGTGGCAAGACTTTCTCCACTTTGGTGGGCGGAGCTTGAGATTTGTTCAGCAAATGGCAGCTAA 1920 0.426 MKRNWNFSRYKDHRGLLRFWVVCLLFQSLLGICCSLNDEGKALLKLRQRILSDPFGALSNWIDEGEIDPCNWFRVQCVDGRVVVLNLKDLCLGGTLAPELANLVHIKSIILRNNSFYGIIPEEIAKLKELEVLDLGYNNFSGSLPADLGSNISLSILLLDNNELLGGFSPEINELKILSESQVDENQLTNAAKMPSCASRSIPQNVGQDSVALRRLLQTRIGSPLNRAADFSSAPTPAASPSTSPSPSAAPPITPNNTSADRNTSASPSQKLPEARSKNTSNKNHVATLVGVIGGGVFLILIASIYICRTNKVTTVKPWATGLSGQLQKAFVTGVPKLKRSELIAACEDFSNVIGTSPIGTVYKGTLSSGVEIAVASVTLTSLNAWSKTLEVQFRKKIDMLSKVNHKNFVNLLGYCEEEEPFTRMVVFEYAPNGTLFEHLHIKEAEHLDWITRLRIAMGMAYSLQYMHQLDPPVALSNMNSSSIFLTEDYAAKIADLSFSYETSEMKTKGSKHFDNPLASTQSNVYDFGVILFEMITSRVPYSVDNSSLENWALDYLQGDRCPLREMVDPTLASFDEEKLEQVAELIKSCVDPDPKQRPSMKDVSTRLRDITNITPEAAVARLSPLWWAELEICSANGS 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1135 639 SUPERFAMILY L domain-like 38 191 - -
Lele25g1135 639 SUPERFAMILY Protein kinase-like (PK-like) 332 608 IPR011009 -
Lele25g1135 639 FunFam Nuclear pore complex protein NUP107 36 194 - -
Lele25g1135 639 Gene3D Phosphorylase Kinase; domain 1 320 430 - -
Lele25g1135 639 MobiDBLite consensus disorder prediction 253 280 - -
Lele25g1135 639 PANTHER PROTEIN MALE DISCOVERER 2 19 636 - -
Lele25g1135 639 Gene3D Transferase(Phosphotransferase) domain 1 431 621 - -
Lele25g1135 639 ProSiteProfiles Protein kinase domain profile. 348 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele25g1135 639 MobiDBLite consensus disorder prediction 227 280 - -
Lele25g1135 639 FunFam Inactive receptor-like serine/threonine-protein kinase 322 430 - -
Lele25g1135 639 Gene3D Ribonuclease Inhibitor 35 218 IPR032675 -
Lele25g1135 639 Pfam Protein tyrosine and serine/threonine kinase 351 607 IPR001245 GO:0004672|GO:0006468
Lele25g1135 639 Pfam Leucine rich repeat N-terminal domain 37 77 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1135 Lele-ChrLele25 7312568 7315915 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g1135 22 604 Receptor kinase-like Gene Family AT5G16000 26.841 6.97e-51 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Lele25g1135 PK_Tyr_Ser-Thr 1.3e-24 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1135 25 7312568 7315915 Lele25g1135 25 7312568 7315915 CCT
Lele25g1135 25 7312568 7315915 Lele26g1136 26 7311741 7315136 CCT
Lele25g1135 25 7312568 7315915 Lele27g0944 27 17344169 17347520 CCT
Lele25g1135 25 7312568 7315915 Lele28g1127 28 7298668 7302022 CCT
Lele25g1135 25 7312568 7315915 Lele27g0944 27 17344169 17347520 hybridization
Lele25g1135 25 7312568 7315915 Lele28g1127 28 7298668 7302022 hybridization