Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1130 ATGGACTCTGACTTCCCCAACAAAGCCTTAACGAGAACGCGATTTTGTGAGCTGGACCCACCACTTTCTGAACCGGTTCTCGAAGCCCTATCAGAGTCTGGCTTCGAGTTCTGCACGCCGGTCCAAGCCGCTACAATACCTTTGCTATGCAGTTTTAAGGACGTGGCCGTCGACGCTGCCACCGGTTCAGGAAAGACGTTGGCATTTGTCGTTCCCCTTGTTGAGATTCTCCGCCGGTCCTGTCCCAATCCCAAACTTCATCAGGTATTTGGAATAATTATATCTCCCACAAGGGAGCTGTCATCCCAAATATACCATGTTGCACAACCTTTCATTGAAACTTTAGCTAATGTTAAGTCCATGCTCCTTGTTGGTGGAGTAGACGTAAAAGCAGATATGAAGAAAATTGACGAAGAAGGAGCTAATATATTGATTGGCACACCCGGGCGGCTATATGACATAATGAATCGAATGGATATATTGGATTTTAAAAGCCTGGAGATTTTAATTTTAGACGAGGCTGATAGACTCTTGGATATGGGATTCCAGAAGCAGATTAATTCCATTATATCTCTCTTACCAAAGCTTCGCAGAACAGGTCTATTCTCTGCTACTCAAACCGAGGCTGTTGAAGAGCTTTCTAAAGCTGGGCTGAGGAACCCTGTGAGGGTTGAAGTCCGGGCAGAGTCAAAATCAGTAAATGAACCTGCAGCATCACAACAACCAACCTCTTCAAGGACACCTGCAGGACTTCAAATTGAGTACATGGAATGCGAGGCTGAAAAGAAACCATCGCAGCTTGTTGATATCTTAATGAAGAACCGCTCCAAAAAAATGATAACATACTTCATGACCTGTGCCTGTGTTGACTATTGGGGACTTGTCCTTCCTCACCTTTCTGCTTTGAAAGGTTTTCCCTTGATCCCTCTTCATGGAAAGATGAAGCAGGCTGCTAGGGAGAAGGCATTGGCGTCATTTACATCTCTTTCAAATGGAATACTACTATGTACAGATGTTGCAGCACGTGGACTTGACATACCTGGAGTTGATTGTATAGTGCAGTATGATCCCCCACAAGATCCAAATGTTTTCATACATAGAGTTGGGCGAACTGCTCGGCTGGGTAAACAAGGACATGCTATTGTCTTCTTATTGCCAAAGGAAGAATCTTATGTGGAATTCCTGCGCGTAAGAAGAGTCCCCCTACAAGAGAGAAGTTGCTCTAATGGTGCATCTGATGTTGTTCCTGAGATTCGTTCTGCTGCCAAAAAAGATCGTGATGTAATGGAGAAAGGACTTAGGGCATTTGTTTCTTATATTCGTGCTTATAAAGAGCACCACTGCTCCTATATTTTTAGGTGGAAAGAACTTGAAATTGGTAAGTTGGCCATGGGATATGGCTTACTGCAGCTTCCTTCAATGTCAGAGTTGAAACAGCAGTCATTGTCCACGGAAGGTTTTGTACCAGTTGAAGACATTAATTTGGAGGACATTAAGTACAGGGATAAATCTCGTGAAAAGCAAAGGAAGCAAAACCTGCAAGCAAAGAAAGAAGCCAAAGAGAAAGAGACAAAGCGTCAGAAACCCAACAAAACCCCAAAAACTGCCCCTGTAACAAGGAAGAAAACAGCTAAACAAAGACGTGCTCAGCAGTCAGTTGAAGATGACGATGAGCTTATGCGAGAATATCGGCTGTGGAAAAAATTGAAAAAAGGAACTTTAGATGAGGATGAGTATGCTAAATTAACAGGCACTGAAGAATTACTTTGA 1770 0.4333 MDSDFPNKALTRTRFCELDPPLSEPVLEALSESGFEFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVVPLVEILRRSCPNPKLHQVFGIIISPTRELSSQIYHVAQPFIETLANVKSMLLVGGVDVKADMKKIDEEGANILIGTPGRLYDIMNRMDILDFKSLEILILDEADRLLDMGFQKQINSIISLLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSVNEPAASQQPTSSRTPAGLQIEYMECEAEKKPSQLVDILMKNRSKKMITYFMTCACVDYWGLVLPHLSALKGFPLIPLHGKMKQAAREKALASFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRTARLGKQGHAIVFLLPKEESYVEFLRVRRVPLQERSCSNGASDVVPEIRSAAKKDRDVMEKGLRAFVSYIRAYKEHHCSYIFRWKELEIGKLAMGYGLLQLPSMSELKQQSLSTEGFVPVEDINLEDIKYRDKSREKQRKQNLQAKKEAKEKETKRQKPNKTPKTAPVTRKKTAKQRRAQQSVEDDDELMREYRLWKKLKKGTLDEDEYAKLTGTEELL 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1130 589 Pfam Helicase conserved C-terminal domain 263 375 IPR001650 -
Lele25g1130 589 Gene3D - 4 227 IPR027417 -
Lele25g1130 589 SMART DUF4217_3 413 476 IPR025313 -
Lele25g1130 589 Coils Coil 503 525 - -
Lele25g1130 589 Pfam Domain of unknown function (DUF4217) 416 474 IPR025313 -
Lele25g1130 589 SMART ultradead3 34 234 IPR014001 -
Lele25g1130 589 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 46 224 IPR014001 -
Lele25g1130 589 PANTHER RNA HELICASE 14 520 - -
Lele25g1130 589 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 15 43 IPR014014 GO:0003724
Lele25g1130 589 CDD SF2_C_DEAD 251 384 - -
Lele25g1130 589 CDD DEADc_DDX55 26 224 - -
Lele25g1130 589 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 90 395 IPR027417 -
Lele25g1130 589 MobiDBLite consensus disorder prediction 501 557 - -
Lele25g1130 589 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 170 178 IPR000629 -
Lele25g1130 589 Pfam DEAD/DEAH box helicase 39 213 IPR011545 GO:0003676|GO:0005524
Lele25g1130 589 FunFam RNA helicase 9 227 - -
Lele25g1130 589 Gene3D - 252 487 IPR027417 -
Lele25g1130 589 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 266 422 IPR001650 -
Lele25g1130 589 SMART helicmild6 293 375 IPR001650 -
Lele25g1130 589 MobiDBLite consensus disorder prediction 501 530 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1130 Lele-ChrLele25 7284029 7287660 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g1130 17 389 Eukaryotic Initiation Factors Gene Family AT1G72730 29.679 5.93e-46 165