Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1113 ATGGCTTCAGTTGATAATTGCAATCCCAATTATGAAATCGAGGAAACAAACGATACTGGAATAAAGGATTCTGCTGAAATTGAAATTTCAGCTTCTCCAGAGACCACTATAGGCGGTGAAAATCCTGTGAGAGAGTTTCGAAACACCTTGAACTCCCATCTTTCTAATGGGATTAAGTTTCACAAATTTGATTCCGCATTAGTCAAATCCATGGCCAAGAGCAACCAGATTTCACAATCTATGCCTTCTTCTGGTGCATATAGCTTCAGAAAACGGGTTAGTGGCATGTTTACACACAAACTTGACTGGAGTTCCCTCAAGAATATGATCAAGGAATGGATTAGAAACCCAATGAACATGGCCCTTTTTGGGTGGATCATCTGTGTTGCTATTTCTGGTGCAATTCTCTTCCTTGTCATGACTGGAATGTTGAACAGCGTGCTTCCAAGGAAGTCTCAGAGAAACACGTGGTTTGAAATTAACAATCAAATACTCAATGCACTGTTTACACTTATGTGTTTATACCAGCAGCCCAAAAGATTCCATCATCTGGTACTTTTGTGCAGATGGAGACAAGATGGTATCTTTGCACTTAGAAAGGTATACTGCAAGAATGGAGCCTATAAACCACACGAATGGGCACATATGATGGTAGTGGTTCTTCTCCTTCATCTGAACTGTTTTGCTCAATATGCACTTTGTGCTCTAAACTTGGGGTACAAAAGATCAGAAAGACCAGTCATAGGAGTTGGAATTTGTATATCCTTTGCAATAGCTGCACCTGCAATTGCTGGTCTTTATACCATTCTTAGCCCTCTTGGTAGGGATTATGAGTTTGAGATGGATGAAGAAAAACAGGTTCAAACCACTTCATATGAAAAGCCATTGGAGAAAAAATATTCATTTGCAACAAGAGATGAACATTATAGGGTATTTGAGAATGAACCACAGTGGAGAGGAGGAATACTTGATATATGGGAGGATATCTCTACTGCATATCTCTCACTCTTCTGCACTTTTTGTGTGTTTGGCAGGAACATGGAGAGACTTGGTTTTGGAAACATGTATGTTCATATTGCTACTTTCATTCTGTTCTGTTCAGCTCCATTCTGGATTTTTTTCTTGGCTGCTGTCGACATTGATAATGACAATGTTAGAGAGGCTCTAGTAGCGACTGGGATTGTTCTCTGTTTTCTTGGTTTGTTGTATGGTGGCTTTTGGAGGATCCAAATGAGAAAGAGGTTCAATTTACCTGCTTATACCTTCTGTTTCGGTGAACCCTCAATTTCTGACTGCACAATATGGCTCTGCTGTTGCTGGTGCTCTCTTGCTCAGGAGGCAAGAACTGGGAATTCCTTTGATGTTGTAGAGGAAACATTCTGCAGGAAAGAAGGTGGAGCGTTGACCACGTCTGCCACAAGTTCTTCTCTGGGTAACAACTCTTTAAGTTCAGATATGCCGCTATGCACTGTAAAGGACCACGCTTTTGAAACAGGTAAAAATAGAACAATTACCCCACCAAGTCCAGTGTTTATAAGAAGAGATGGCCCTTAG 1554 0.4073 MASVDNCNPNYEIEETNDTGIKDSAEIEISASPETTIGGENPVREFRNTLNSHLSNGIKFHKFDSALVKSMAKSNQISQSMPSSGAYSFRKRVSGMFTHKLDWSSLKNMIKEWIRNPMNMALFGWIICVAISGAILFLVMTGMLNSVLPRKSQRNTWFEINNQILNALFTLMCLYQQPKRFHHLVLLCRWRQDGIFALRKVYCKNGAYKPHEWAHMMVVVLLLHLNCFAQYALCALNLGYKRSERPVIGVGICISFAIAAPAIAGLYTILSPLGRDYEFEMDEEKQVQTTSYEKPLEKKYSFATRDEHYRVFENEPQWRGGILDIWEDISTAYLSLFCTFCVFGRNMERLGFGNMYVHIATFILFCSAPFWIFFLAAVDIDNDNVREALVATGIVLCFLGLLYGGFWRIQMRKRFNLPAYTFCFGEPSISDCTIWLCCCWCSLAQEARTGNSFDVVEETFCRKEGGALTTSATSSSLGNNSLSSDMPLCTVKDHAFETGKNRTITPPSPVFIRRDGP 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1113 517 TIGRFAM A_thal_Cys_rich: uncharacterized Cys-rich domain 317 449 IPR006461 -
Lele25g1113 517 Pfam Protein of unknown function (DUF2985) 112 190 IPR021369 -
Lele25g1113 517 Pfam PLAC8 family 318 448 IPR006461 -
Lele25g1113 517 PANTHER PLAC8 FAMILY PROTEIN-RELATED 19 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1113 Lele-ChrLele25 7188823 7190376 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele27g0964 27 17464577 17465542 Lele25g1113 25 7188823 7190376 CCT
Lele28g1106 28 7166389 7172447 Lele25g1113 25 7188823 7190376 CCT
Lele25g1113 25 7188823 7190376 Lele25g1113 25 7188823 7190376 CCT
Lele25g1113 25 7188823 7190376 Lele26g1113 26 7186322 7186621 CCT
Lele25g1113 25 7188823 7190376 Lele27g0965 27 17469173 17470726 CCT
Lele25g1113 25 7188823 7190376 Lele26g1113 26 7186322 7186621 ECH
Lele25g1113 25 7188823 7190376 Lele25g1113 25 7188823 7190376 ECH
Lele25g1113 25 7188823 7190376 Lele27g0965 27 17469173 17470726 hybridization