Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1111 ATGGCGGATCAGTTAGCAAGGGCGGAGGAATTCGAGGCGAAAGCAGAAAAGAAGCTTAATAGCTGGGGATTGTTCGGCTCCAAATATGAGGATGCTGCTGATCTCTTCGATAAAGCCGCCAATTCCTACAAGCTTGCCAAAGCATGGGATAAAGCTGGCTCGACATACATTAAGTTGACAAATTGTTACTTCAAGGTGGAAAGCAAGCATGAAGCTGCCCAAGCTTATGTTGATGCTGCTCATTGCTATAAAAAGACAAATATAACTGAGGCTGTATCTTGCTTGGACAAAGCAGTGAACATTTTCTGTGAAATTGGAAGACTCAGTATGGCTGCTAGATATTTTAAGGAAATTGCTGAATTGTATGAGTCCGAACAGAACATTGAGAAGGCTATTGTTTACTATGAAAAAGCAGCTGATTTTTTTGCAAATGAAGAAGTGACAACTTCTGCTAACCAGTGCAAGCAAAAAGTTGCTCAGTTTGCTGCTCAGCTTGAACAGTATCAGAAGGCAATAGAGATTTATGAAGAAATAGCTCGCCATTCTCTAGGCAGTAGTTTGTTGAAATATGGAGTTAAAGGGCATCTTCTTAATGCTGGCATTTGCCAACTCTGTAAAGGGGATGTTGTTGCCATCACCAATGCACTAGAGCGATATCAGGAATTGGATCCAACATTTTCAGGAACACGGGAATATAGACTTTTGGCGGATATTGCTGCTTCAATTGATGAAGAAGATGTTGGGAAGTTTACTGATGTTGTCAAGGAGTTTGACAGCATGACCCCTGTGGATTCTTGGAAGACAACTCTCCTTTTGAGAGTGAAGGAAAAGCTGAAATCTAAAGAACTCGAGGAGGACGATCTCACCTAA 870 0.4149 MADQLARAEEFEAKAEKKLNSWGLFGSKYEDAADLFDKAANSYKLAKAWDKAGSTYIKLTNCYFKVESKHEAAQAYVDAAHCYKKTNITEAVSCLDKAVNIFCEIGRLSMAARYFKEIAELYESEQNIEKAIVYYEKAADFFANEEVTTSANQCKQKVAQFAAQLEQYQKAIEIYEEIARHSLGSSLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQELDPTFSGTREYRLLADIAASIDEEDVGKFTDVVKEFDSMTPVDSWKTTLLLRVKEKLKSKELEEDDLT 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1111 289 Gene3D Tetratricopeptide repeat domain 6 288 IPR011990 GO:0005515
Lele25g1111 289 PRINTS NSF attachment protein signature 28 47 IPR000744 GO:0006886
Lele25g1111 289 PRINTS NSF attachment protein signature 152 175 IPR000744 GO:0006886
Lele25g1111 289 PRINTS NSF attachment protein signature 183 202 IPR000744 GO:0006886
Lele25g1111 289 PRINTS NSF attachment protein signature 119 136 IPR000744 GO:0006886
Lele25g1111 289 PRINTS NSF attachment protein signature 224 244 IPR000744 GO:0006886
Lele25g1111 289 PRINTS NSF attachment protein signature 255 275 IPR000744 GO:0006886
Lele25g1111 289 PRINTS NSF attachment protein signature 91 108 IPR000744 GO:0006886
Lele25g1111 289 Coils Coil 151 178 - -
Lele25g1111 289 Coils Coil 271 289 - -
Lele25g1111 289 Pfam Soluble NSF attachment protein, SNAP 7 278 - -
Lele25g1111 289 PANTHER SOLUBLE NSF ATTACHMENT PROTEIN SNAP 4 279 IPR000744 GO:0006886
Lele25g1111 289 SUPERFAMILY TPR-like 7 281 IPR011990 GO:0005515
Lele25g1111 289 CDD SNAP 7 278 IPR000744 GO:0006886
Lele25g1111 289 FunFam Alpha-soluble NSF attachment protein-like 6 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1111 Lele-ChrLele25 7179707 7184321 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g1113 26 7186322 7186621 Lele25g1111 25 7179707 7184321 CCT
Lele27g0965 27 17469173 17470726 Lele25g1111 25 7179707 7184321 CCT
Lele25g1111 25 7179707 7184321 Lele25g1111 25 7179707 7184321 CCT
Lele25g1111 25 7179707 7184321 Lele26g1111 26 7177548 7181745 CCT
Lele25g1111 25 7179707 7184321 Lele27g0967 27 17474937 17479237 CCT
Lele25g1111 25 7179707 7184321 Lele28g1104 28 7157705 7161928 CCT
Lele25g1111 25 7179707 7184321 Lele26g1111 26 7177548 7181745 ECH
Lele25g1111 25 7179707 7184321 Lele25g1111 25 7179707 7184321 ECH
Lele25g1111 25 7179707 7184321 Lele27g0967 27 17474937 17479237 hybridization
Lele25g1111 25 7179707 7184321 Lele28g1104 28 7157705 7161928 hybridization