Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1110 ATGTTTCATTCCCTGCAGCGCACACTGTGTGGTTATGTTGTGAACTACTGGACAAGTCGATCCTCCGCGCTACTTCTCTCCGTTTATAAAATCGCCGCCGGTATGTCGCCGGCCAACGGAGTGCACGTCCCTCTCTTGCCGGAAAGCAAAGTTTTAGTGAAGCCAGCCTCCGTCTATGGAGCTGTCTTCAATGTGGCTACGAGTATAATTGGCGCCGGAATCATGTCGATTCCGGCGACCCTGAAGATTCTGGGCTTAATTCCGGCCGTCGGGATGATCCTGGTCATCGGTTTCCTTGCCGAAGTTTCAGTGGACTTCCTCATGAGGTTTACGCATTCCGGCGCGACCACCACTTATGCTGGCGTGATGAGAGAAGCTTTCGGGCCGGCCGGAGCACTTGCCGCCCAAATTGGTGTAATGATCACAAATCTTGGGTGTTTAATTATGTACCTCATTATCATCGGGGATGTTTTGTCTGGAAATTCACCTGGAGGCGAGGTTCACTTGGGGATTCTGCAACAATGGTTAGGAATTCACTGGTGGACTTCACGAGAATTTGCTCTGCTCGTGATAATCATCGTCATGCTTCCGTTGGTCCTGTATCGCCGTGTGGAGTCGTTAAGGTTCAGTTCTGCAATATCAACTCTTCTAGCAGTGGCATTCGTGGGCATATGTTCTGGCATGGCAATCACTGCTCTGATCGCCGGAAAAACGCATCCTCCGAGATTGCTTCCTGAGTTCAACCACCACACCTCCTTTCTTGATCTATTCACAGCCGTTCCAGTCATAGTCACGGCCTTCACCTTTCACTTCAATGTGCATCCAATTGGGTTTGAACTTGCGAAGCCATCTGATATGGCAGTAGCAGTTCGAATAGCTTTAGTTCTATGCGGTGCCATATACTTTGCGATTGGCCTATTTGGGTATCTTCTGTTTGGGGATTCAACGCAATCGGATATACTCATAAACTTTGATCAGAACAGTGCTGGTTCTGCAACTGGTTCCTTGCTCAACACTCTGGTTCGTTTAAGCTATGCTTTTCACGTGATGTTGGTGTTTCCTCTCTTGAACTTCTCTCTGAGAGCCAACATAGACGAGCTTCTCTTCCCCAAGAAGCCTCTCCTTGCAACAGACAAGAAAAGATTTGTGATCCTCACTCTGGTGCTCCTCGTCTCCAGCTACCTCATCGCCATAGCTCTCCCTGATATCTGGTACTTCTTTCAGTTCGTGGGATCAACCTCTGCAGTGTGCCTCGCCTTCATCTTTCCCGGTTCTCTTGCTCTCAGGAATATCGAAAATAAGAGACAAGATCAAAGCACTGATAATGATCATCCTGGCTGTAGTAACAAGTGCGATTGCCATTTCTATCAACATATACAACTTCTTCGGTAA 1392 0.4813 MFHSLQRTLCGYVVNYWTSRSSALLLSVYKIAAGMSPANGVHVPLLPESKVLVKPASVYGAVFNVATSIIGAGIMSIPATLKILGLIPAVGMILVIGFLAEVSVDFLMRFTHSGATTTYAGVMREAFGPAGALAAQIGVMITNLGCLIMYLIIIGDVLSGNSPGGEVHLGILQQWLGIHWWTSREFALLVIIIVMLPLVLYRRVESLRFSSAISTLLAVAFVGICSGMAITALIAGKTHPPRLLPEFNHHTSFLDLFTAVPVIVTAFTFHFNVHPIGFELAKPSDMAVAVRIALVLCGAIYFAIGLFGYLLFGDSTQSDILINFDQNSAGSATGSLLNTLVRLSYAFHVMLVFPLLNFSLRANIDELLFPKKPLLATDKKRFVILTLVLLVSSYLIAIALPDIWYFFQFVGSTSAVCLAFIFPGSLALRNIENKRQDQSTDNDHPGCSNKCDCHFYQHIQLLR 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1110 463 Pfam Transmembrane amino acid transporter protein 55 437 IPR013057 -
Lele25g1110 463 PANTHER AMINO ACID TRANSPORTER 54 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1110 Lele-ChrLele25 7174472 7177626 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g1110 35 432 Amino Acid or Auxin Permease AAAP Family AT3G56200 60.199 7.01e-161 460
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g1111 26 7177548 7181745 Lele25g1110 25 7174472 7177626 CCT
Lele27g0967 27 17474937 17479237 Lele25g1110 25 7174472 7177626 CCT
Lele28g1104 28 7157705 7161928 Lele25g1110 25 7174472 7177626 CCT
Lele25g1110 25 7174472 7177626 Lele25g1110 25 7174472 7177626 CCT
Lele25g1110 25 7174472 7177626 Lele26g1110 26 7171291 7173673 CCT
Lele25g1110 25 7174472 7177626 Lele27g0968 27 17482498 17484372 CCT
Lele25g1110 25 7174472 7177626 Lele28g1103 28 7152155 7154892 CCT
Lele25g1110 25 7174472 7177626 Lele25g1110 25 7174472 7177626 ECH
Lele25g1110 25 7174472 7177626 Lele27g0968 27 17482498 17484372 hybridization
Lele25g1110 25 7174472 7177626 Lele28g1103 28 7152155 7154892 hybridization