Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1107 ATGGAAAGGGGAAGATTGGCACGTGTGGAAAGAGAGAAAGAGACCCAGCTATCAGCAGAGTTGAAAGAAAAAGAAAAGCACCAGAGAGAAAGCAAAGGCTCATCAAAAAGCTCAGGAGAGAGAAAAAGAGAAGGCAACATGGTTTCTAATAAACAGCGCAAAAGAGCAGCTCTGCATGAGAAGCTTCAACTCCTTCGTTCTATTACTAACTCTCATTCTCTAAACAAAACTTCGATCATATTGGACGCAACGAAGTACATCGAAGAGCTAAAGCAGAAGGTAGAAAGACTGAATCAAGACATAGCCACTGCAGAAACTTCAAAAGACGACCAAAATCATGTGCCTATGGTTACAGTGGAAACCGTAGAAAAGGGATTCCTGATAAATGTATATTCAGCCAACAGTTGCCCAGGCCTGCTAGTTCCCATATTGGAGGTTTTCGAAGAGATGGGCCTCAGCGTCATGGAAGCTAGGGTTTCATGTTCAGACACTTTCCGATTTCAAGCAGTAGGAGGAGAAGAGGAAGAAGAAGGTGATAGCATGGATGCAGAAGCAGTGACACAAGCAGTGGGAAGAGCCATAAAGAGTTGGAGAGAGAGTACTACGAGTCAACACTCCAGGGTTCTTGAAACCTCCTTCTCCTCAATTTCTTTTGCGTTGCATCCTGCCTTCACCAATGGAGGACCCACCGTCGGTCTGAGCGCCGCCGATTCTAAGGTTTCAATCTTTCTCTCTTATTTGGTTAATCCCGTGGATGTTGAGATTCGATGTATTATTACCGTCTTAGATACTGGTAGTTTGGGGTTTTGGGTATTATGGATGGGAAATTGGGAGTGGATGCTGATACTGAAAAGAATTGCGGATATTCAGCCCATTGTCTTTCCTACTCATTCTTTTAGGTCAAGCAGAGTCTGTACTAGGCAGGAAGATCAATATGTTTGGCGGAATATGGCCAATCATTCTTTAGTTTTTAATGATGCTCCTCTCGATTTAGTAGTTCATCCATTAGTCATTGGGCAGGAGTTTCCTGATGTGGAAACCTGCAGAAGAACAATGAAAGATGTTGCTATTGCTATGCATTTTGATCTTCGCATAGTTAAATCTGATCGCAGTCGTTTTATAGCAAAATGCTCTAAAGAAGGGTGCCCATGGCGGGTCCATGTAGCAAAGTGTCCGGGTGGTCCAACTTTTACTGTGAGAACGCTACATGGAGAGCATACATGTGAGGGAGTTCACAACCTTCATCACCAGCAGGCATCAGTGGCCGCTGAGTTTGAGAGCAAGATTGCTGAGATGATAGAAATTTCACAGGATGTTATACCATGGTTTCAACATTTTCCTCCCCAACTTTGGGCTGTGGCATACTTTGAGGGTGTTCGATTTGGGCATTTCACGCTGGGAGTGACAGAATTGTTGTATAACTGGGCCCTTGAATGTCATGAGCTCCCTATAGTGCAGATGATGGAATACATCCGCCAGCAGATCGCATCTCGGTTTAATGAACAGCAAGATATAGGCATGATGTGGACATCGATGCTTGTACCATCTGCTGAGAAGCGGATTTTGGAAGCACTTGCTGATGCTCACTGCTATCAAGTGCTCCGAGCCAATGAAGTTGAGTTTGAGATTGTGTCTACAGAGAGGACAAATATTGTGGATATAAGAAGTCGAGTGTGTTCTTGTCGCCGTTGGCAGCTGTATGGCTTACCTTGTGCACATGCTGCTGCTGCACTTATTTCTTGTGGGCACAATGCTCATCTTTTTGCTGAACCTTGCTTCACAGTAAAAAGTTACAGAGTGACCTATTCACAGATGATAAATCCTATTCCAGACAAGAGTCAATGGACAGAACTCGGGGAAGGAGCGGAAGGTGGAGGTGCTAAGGTGGACATCATCATACGTCCACCAAAAACACGTAGACCACCTGGGAGGCCTAAAAAGAAGGTCCTTAGGGTGGAGAACTTTAAACGTCCCAAAAGAGTTGTTCAGTGTGGTCGTTGCCATATGTTAGGACATTCTCAAAAGAAATGCACACTGCCCCTTTGA 2046 0.4453 MERGRLARVEREKETQLSAELKEKEKHQRESKGSSKSSGERKREGNMVSNKQRKRAALHEKLQLLRSITNSHSLNKTSIILDATKYIEELKQKVERLNQDIATAETSKDDQNHVPMVTVETVEKGFLINVYSANSCPGLLVPILEVFEEMGLSVMEARVSCSDTFRFQAVGGEEEEEGDSMDAEAVTQAVGRAIKSWRESTTSQHSRVLETSFSSISFALHPAFTNGGPTVGLSAADSKVSIFLSYLVNPVDVEIRCIITVLDTGSLGFWVLWMGNWEWMLILKRIADIQPIVFPTHSFRSSRVCTRQEDQYVWRNMANHSLVFNDAPLDLVVHPLVIGQEFPDVETCRRTMKDVAIAMHFDLRIVKSDRSRFIAKCSKEGCPWRVHVAKCPGGPTFTVRTLHGEHTCEGVHNLHHQQASVAAEFESKIAEMIEISQDVIPWFQHFPPQLWAVAYFEGVRFGHFTLGVTELLYNWALECHELPIVQMMEYIRQQIASRFNEQQDIGMMWTSMLVPSAEKRILEALADAHCYQVLRANEVEFEIVSTERTNIVDIRSRVCSCRRWQLYGLPCAHAAAALISCGHNAHLFAEPCFTVKSYRVTYSQMINPIPDKSQWTELGEGAEGGGAKVDIIIRPPKTRRPPGRPKKKVLRVENFKRPKRVVQCGRCHMLGHSQKKCTLPL 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1107 681 Coils Coil 10 30 - -
Lele25g1107 681 CDD ACT_UUR-ACR-like 127 194 - -
Lele25g1107 681 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 47 102 IPR036638 GO:0046983
Lele25g1107 681 ProSiteProfiles Zinc finger SWIM-type profile. 541 582 IPR007527 GO:0008270
Lele25g1107 681 Pfam MuDR family transposase 336 399 IPR004332 -
Lele25g1107 681 MobiDBLite consensus disorder prediction 1 54 - -
Lele25g1107 681 SMART 26again6 557 584 IPR006564 GO:0008270
Lele25g1107 681 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 25 204 - -
Lele25g1107 681 Coils Coil 80 107 - -
Lele25g1107 681 Pfam SWIM zinc finger 548 581 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1107 Lele-ChrLele25 7153415 7160410 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g1107 34 192 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 29.143 1.30e-08 55.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g1108 26 7166030 7169032 Lele25g1107 25 7153415 7160410 CCT
Lele27g0970 27 17487579 17488264 Lele25g1107 25 7153415 7160410 CCT
Lele28g1101 28 7146717 7149687 Lele25g1107 25 7153415 7160410 CCT
Lele25g1107 25 7153415 7160410 Lele25g1107 25 7153415 7160410 CCT
Lele25g1107 25 7153415 7160410 Lele26g1107 26 7155072 7156282 CCT
Lele25g1107 25 7153415 7160410 Lele27g0971 27 17498787 17507618 CCT
Lele25g1107 25 7153415 7160410 Lele28g1100 28 7133272 7138483 CCT
Lele25g1107 25 7153415 7160410 Lele26g1107 26 7155072 7156282 ECH
Lele41g0225 41 1839189 1840569 Lele25g1107 25 7153415 7160410 ECH
Lele42g0219 42 1839556 1841011 Lele25g1107 25 7153415 7160410 ECH
Lele43g1139 43 19745146 19746519 Lele25g1107 25 7153415 7160410 ECH
Lele44g1127 44 19894749 19896676 Lele25g1107 25 7153415 7160410 ECH
Lele01g1015 01 5882328 5883424 Lele25g1107 25 7153415 7160410 ECH
Lele02g1030 02 6343401 6344516 Lele25g1107 25 7153415 7160410 ECH
Lele03g1016 03 5890967 5892075 Lele25g1107 25 7153415 7160410 ECH
Lele04g1019 04 6316093 6317161 Lele25g1107 25 7153415 7160410 ECH
Lele25g1107 25 7153415 7160410 Lele25g1107 25 7153415 7160410 ECH
Lele25g1107 25 7153415 7160410 Lele27g0971 27 17498787 17507618 hybridization
Lele25g1107 25 7153415 7160410 Lele28g1100 28 7133272 7138483 hybridization