Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1106 ATGGTATACCCAGCAGAACAAACCCATACTGATATAACTGTCACTCCTGGCAATAATGGCCCTCCAATACCTTCCCATAAAGCAGTTTTGGCGACAAGGTCGAAGGTTTTCAAGAACATGTTAGACTCAGATGAATGCAAAGCTGCACCAACTAACAACATTACAATACCTGAATTGAACTACGAAGAGCTAGAGAGCCTTCTGGAGTTTCTCTACAGAGGGAACTTGAGTCCAGAAAAATTGGGGAAGCATGTATTTGCCTTGTCACTCGCAGCTGATAAATATGGGATTGCTTATTTACAGAAGCAATGCGAGCAGTATATGCTGAATTCACTAAGCATATCTAATGCGCTTGATGTGTTGGAGATTGCAGACACATGTTCCAACCAGAAGTTGAAGGACACTGCTATGAATTTCTCAGTTGACAACATTCAGGAGATAGTTTTGTCCTCAAGATATGAAGTATTTGCGCACAGAAGCCCTCATTTAACTGTGCAACTTTCCAGGGAATTATTGAAGATTCTCAATATCAAATGA 537 0.4078 MVYPAEQTHTDITVTPGNNGPPIPSHKAVLATRSKVFKNMLDSDECKAAPTNNITIPELNYEELESLLEFLYRGNLSPEKLGKHVFALSLAADKYGIAYLQKQCEQYMLNSLSISNALDVLEIADTCSNQKLKDTAMNFSVDNIQEIVLSSRYEVFAHRSPHLTVQLSRELLKILNIK 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1106 178 CDD BACK 113 175 - -
Lele25g1106 178 Pfam BTB/POZ domain 7 111 IPR000210 GO:0005515
Lele25g1106 178 MobiDBLite consensus disorder prediction 1 21 - -
Lele25g1106 178 Gene3D - 113 176 - -
Lele25g1106 178 Gene3D Potassium Channel Kv1.1; Chain A 4 112 IPR011333 -
Lele25g1106 178 PANTHER BTB/POZ DOMAIN CONTAINING PROTEIN, EXPRESSED-RELATED 5 173 IPR044784 -
Lele25g1106 178 SUPERFAMILY POZ domain 6 110 IPR011333 -
Lele25g1106 178 SMART BTB_4 10 112 IPR000210 GO:0005515
Lele25g1106 178 ProSiteProfiles BTB domain profile. 10 80 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1106 Lele-ChrLele25 7152162 7152858 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Lele25g1106 BTB 2.7e-21 CL0033
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1106 25 7152162 7152858 Lele25g1106 25 7152162 7152858 ECH
Lele25g1106 25 7152162 7152858 Lele27g0972 27 17508177 17509198 hybridization
Lele25g1106 25 7152162 7152858 Lele28g1098 28 7129832 7130828 hybridization