LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele25g1074	ATGTCGTTTCCCAACCATCCTCCCTCCTCCTCTCGAGCCCCCTTCCACCGCCGCGCCCAATCCGAGGGCCAATTCCGATTGCCCGACAACTTCGATCTCGAACATTCCCCCTTCGATTCCCCTTCCCTCGCCTACCAAGATCTAGCCGCATCTGAGGACGACCTCTTCTCCGCCTATATGGATCTTGACAAATCCGGATCCCAACTTCACTCTCCTTCATCCGACCCCAAACCTGGAACCTCCGACGCTCATAATGCCAATGCCGCACCATCTCGTACTAGCGCCGACGGTTATGATCCTCCCACGCCTCGGCATCGCCACAGCAATTCAGCCGATGGCACTTTCGTGCTCGGGGCCATTGACGCTAAGAAGGCAATGGCTCCCGAAAAGCTTGCCGAATTGTGGATTGTCGATCCTAAGCGAGCTAAGAGGATTCTGGCAAATCGCCAATCTGCCGCTCGTTCAAAAGAGAGGAAAGCGCTCTATGTATTAGAACTTGAGAAAAAAATTCAAACCCTTCAGACAGAAGCAACCACTCTTTCCGCTCAATTAAATCTTTTCCAGAGAGATACATCTGGTTTGACTAGTGAAAATACAGAGCTGAAACTTCGGTTACAAGCTATGGAACAACAAGCTAAGTTACGTGATGCTCTAAATGAAGCACTGAAGAAAGAGTTTGATAGGCTTAAGGTTGCCACTGGAGAAACAGTACATCCATCCTTAACCCAAACCTGTAATATGCAAGAGCATCAAATTCCATACTCTCAAGGTTCTTTCTTCGTACATCAGCCAAAATGTGGACCATGTGGTGAACCTCAGATCATGCAAATGCAGCAGTTACATGCACTCTCATCTAATCTGTCAAATCCTCATCATCAGCCTCTTCTTGCGGTAGCCAGCCTGCACGACATGTCGGAAATGTTGCCTCAGGAATCTATTGGCCAATTTCAGGGGCTTGAGATAAGCACCGGGGGTGCTCCCCTTCTGACGCCTGATGGTTCCTCTGGTCCTGTCAAACAAATCAGCAGTGCTTTTTGA	1038	0.4923	MSFPNHPPSSSRAPFHRRAQSEGQFRLPDNFDLEHSPFDSPSLAYQDLAASEDDLFSAYMDLDKSGSQLHSPSSDPKPGTSDAHNANAAPSRTSADGYDPPTPRHRHSNSADGTFVLGAIDAKKAMAPEKLAELWIVDPKRAKRILANRQSAARSKERKALYVLELEKKIQTLQTEATTLSAQLNLFQRDTSGLTSENTELKLRLQAMEQQAKLRDALNEALKKEFDRLKVATGETVHPSLTQTCNMQEHQIPYSQGSFFVHQPKCGPCGEPQIMQMQQLHALSSNLSNPHHQPLLAVASLHDMSEMLPQESIGQFQGLEISTGGAPLLTPDGSSGPVKQISSAF	345

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele25g1074	345	CDD	bZIP_plant_RF2	141	190	IPR044759	GO:0003700\|GO:0006355
	Lele25g1074	345	Coils	Coil	163	225	-	-
	Lele25g1074	345	Gene3D	-	139	193	-	-
	Lele25g1074	345	MobiDBLite	consensus disorder prediction	64	92	-	-
	Lele25g1074	345	SUPERFAMILY	Leucine zipper domain	140	194	IPR046347	GO:0003700\|GO:0006355
	Lele25g1074	345	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	138	201	IPR004827	GO:0003700\|GO:0006355
	Lele25g1074	345	MobiDBLite	consensus disorder prediction	1	17	-	-
	Lele25g1074	345	MobiDBLite	consensus disorder prediction	324	345	-	-
	Lele25g1074	345	FunFam	probable transcription factor PosF21	139	192	-	-
	Lele25g1074	345	SMART	brlzneu	136	200	IPR004827	GO:0003700\|GO:0006355
	Lele25g1074	345	MobiDBLite	consensus disorder prediction	59	112	-	-
	Lele25g1074	345	PANTHER	TRANSCRIPTION FACTOR POSF21-RELATED	7	293	-	-
	Lele25g1074	345	MobiDBLite	consensus disorder prediction	1	41	-	-
	Lele25g1074	345	Pfam	bZIP transcription factor	140	198	IPR004827	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele25g1074	Lele-ChrLele25	6961586	6964513	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele25g1074	8	325	bZIP Transcription Factor Family	AT2G40620	51.952	1.41e-90	274

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Lele25g1074		bZIP_1	5.8e-08	CL0018